Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GSSGSSGCSEVNVVKERPKTDEHKSYSCSFKGCTDVELVAVICPYCEKNFCLRHRHQSDHDCEKLEVAKPRMAATQKLVR
SGPSSG

The query sequence (length=86) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1wfe:A 86 86 1.0000 1.0000 1.0000 4.85e-60
2 7y7l:A 45 41 0.4070 0.7778 0.8537 4.56e-21
3 1wys:A 75 86 0.3256 0.3733 0.3256 3.53e-09
4 1x4v:A 63 59 0.2558 0.3492 0.3729 9.49e-08
5 1wff:A 85 86 0.3256 0.3294 0.3256 0.005
6 2ct7:A 86 94 0.3372 0.3372 0.3085 0.005
7 2dja:A 84 89 0.3372 0.3452 0.3258 0.091
8 5ij4:A 49 33 0.1279 0.2245 0.3333 0.091
9 7yab:A 44 38 0.1279 0.2500 0.2895 0.48
10 1wg2:A 64 70 0.2558 0.3438 0.3143 1.2
11 3anl:A 400 19 0.1163 0.0250 0.5263 1.4 3anl:B, 3anm:A, 3anm:B, 3ann:A, 3ann:B, 2egh:A, 2egh:B, 1jvs:A, 1jvs:B, 1ono:A, 1ono:B, 1onp:A, 1onp:B, 1q0h:A, 1q0l:A, 1q0q:A, 1q0q:B, 3r0i:A, 3r0i:B, 1t1r:A, 1t1r:B, 1t1s:A, 1t1s:B
12 1wfp:A 74 71 0.2558 0.2973 0.3099 2.4
13 1wim:A 94 100 0.3953 0.3617 0.3400 2.9 6l99:A
14 7s0m:B 305 25 0.0930 0.0262 0.3200 3.0 7s0m:A
15 6sc6:A 365 33 0.1279 0.0301 0.3333 3.1 5edv:A, 5edv:B, 6gzy:A, 6gzy:B, 6kc5:B, 6kc6:A, 6kc6:C, 6kc6:E, 6kc6:G, 6kc6:I, 6kc6:K, 4ljo:A, 4ljp:A, 4ljq:B, 4ljq:C, 4ljq:A, 4ljq:D, 6sc5:A, 6sc7:A, 6sc8:A, 6sc9:A, 7v8f:B, 7v8g:D, 7v8g:C
16 2eod:A 66 38 0.1279 0.1667 0.2895 4.1
17 7ste:A 468 31 0.1512 0.0278 0.4194 5.0 8fs4:A, 7sh2:A
18 7yx4:A 650 21 0.1163 0.0154 0.4762 5.1 7ptv:A, 7ptv:B, 7yx4:B, 7yx5:A
19 1o4t:A 115 24 0.1279 0.0957 0.4583 7.9 1o4t:B
20 5hj7:B 260 34 0.1279 0.0423 0.3235 8.2 5hj7:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218