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BioLiP
>protein
GSSANDWQCKTCSNVNWARRSECNMCNTPKYAK

The query sequence (length=33) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2k1p:A 33 33 1.0000 1.0000 1.0000 5.97e-19
2 6g99:B 41 29 0.4545 0.3659 0.5172 0.001
3 1n0z:A 45 30 0.4545 0.3333 0.5000 0.004
4 2mxv:A 43 25 0.3333 0.2558 0.4400 0.022
5 1nj3:A 31 30 0.3030 0.3226 0.3333 0.048 1q5w:A
6 2crc:A 52 21 0.2727 0.1731 0.4286 0.29
7 5m3k:E 145 21 0.2424 0.0552 0.3810 0.34 5m3k:B, 5mg5:B, 5mg5:E, 5mg5:H, 5mg5:K, 5mg5:N, 5mg5:Q, 5mg5:T, 5mg5:W
8 8im5:A 66 20 0.2727 0.1364 0.4500 0.36 3b0a:E
9 3a9j:C 32 31 0.2424 0.2500 0.2581 1.3 9avt:C, 9avw:C, 7e62:C, 7e62:J, 2wwz:C, 2wx0:C, 2wx0:G, 2wx1:C
10 6uca:D 416 24 0.2727 0.0216 0.3750 1.5 6uca:A, 6uca:B, 6uca:C, 6uca:E, 6uca:F
11 7yui:B 232 20 0.2727 0.0388 0.4500 2.2 3b08:K, 3b08:B, 3b08:E, 3b08:H, 3b0a:B
12 7mo2:B 38 24 0.3030 0.2632 0.4167 2.7 3ch5:B, 7mo2:D
13 2c6a:A 46 25 0.3030 0.2174 0.4000 4.1 2c6b:A, 4xxb:B
14 2ebq:A 47 24 0.3030 0.2128 0.4167 5.7 2gqe:A, 2k0c:A
15 6esq:H 128 19 0.2424 0.0625 0.4211 6.8 6et9:E, 6et9:F, 6et9:G, 6et9:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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