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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GSRVVILFTDIEESTALNERIGDRAWVKLISSHDKLVSDLVRRQSGHVVESQGDGFMVAFARPEQAVRCGIELQRALRRN
ANREEIRVRIGIHMGRSVRRGLFGRNVAMAYRVAAQAAGGEILVSQPVRDALSRSDGIRFDDGREVELKGFSGTYRLFAV
L

The query sequence (length=161) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4wp8:B 166 166 0.9752 0.9458 0.9458 4.69e-104 5d0e:A, 5d0e:B, 5d0g:A, 5d0g:B, 5d0h:A, 5d0h:B, 5d15:A, 5d15:B, 4wp8:A, 4wp9:A, 4wp9:B, 4wpa:A, 4wpa:B
2 1ybu:A 166 163 0.3789 0.3675 0.3742 4.38e-22 1ybu:D
3 6fht:B 735 170 0.2733 0.0599 0.2588 2.35e-11 5ajg:A, 8avv:A, 8avv:B, 8avx:A, 8avx:B, 8bor:A, 8bor:B, 8bor:C, 8bor:D, 8c3i:B, 8c3i:A, 5c5k:A, 5c5k:B, 5c5k:C, 5c5k:D, 4cqh:A, 6fht:A, 6ftd:A, 6ftd:B, 4ijg:A, 5k5b:A, 5l8m:A, 5lbr:A, 5mg0:A, 5mg1:A, 5nfx:A, 5nm3:A, 5nm3:B, 5nm3:C, 5nm3:D, 5nwn:A, 5nwn:B, 5nwn:C, 5nwn:D, 4o01:A, 4o01:B, 4o01:C, 4o01:D, 4o0p:A, 4o0p:B, 4o8g:A, 2o9b:A, 2o9c:A, 4q0h:A, 4q0i:A, 4q0j:A, 3s7n:A, 3s7o:A, 3s7p:A, 3s7q:A, 8sgk:A, 8sgk:B, 6t3l:B, 6t3l:A, 6t3u:B, 6t3u:A, 4y3i:A, 4y5f:A, 4z1w:A, 7z9d:A, 7z9e:A, 4zrr:A, 1ztu:A
4 1fx4:A 231 184 0.3292 0.2294 0.2880 2.85e-11
5 1y10:C 363 160 0.2795 0.1240 0.2812 2.90e-07 2ev1:A, 2ev1:B, 2ev2:A, 2ev2:B, 2ev3:A, 2ev3:B, 2ev4:A, 2ev4:B, 1y10:A, 1y10:B, 1y10:D
6 8buz:A 890 161 0.2236 0.0404 0.2236 0.020
7 6pas:B 576 134 0.2112 0.0590 0.2537 0.032 6pat:B
8 1wc4:A 199 181 0.2919 0.2362 0.2597 0.035 2bw7:A, 2bw7:B, 2bw7:C, 2bw7:D, 1wc0:A, 1wc0:B, 1wc1:A, 1wc1:C, 1wc1:B, 1wc3:A, 1wc3:B, 1wc4:B, 1wc5:A, 1wc5:D, 1wc5:B, 1wc5:C, 1wc6:A, 1wc6:C, 1wc6:B
9 1azs:A 190 156 0.2360 0.2000 0.2436 0.15 3c14:A, 3c15:A, 3c16:A, 1cjk:A, 1cjt:A, 1cju:A, 1cjv:A, 1cs4:A, 1cul:A, 3g82:A, 2gvd:A, 2gvz:A, 3maa:A, 1tl7:A, 1u0h:A
10 1zov:A 381 29 0.0807 0.0341 0.4483 0.67 1zov:B
11 8hbf:A 522 165 0.2360 0.0728 0.2303 0.79 7d9r:A, 7d9s:A, 7d9u:A, 8hbh:A, 6jt2:A
12 4ijs:A 232 46 0.0745 0.0517 0.2609 1.3 4ijs:B, 4ijs:C, 4ijs:D, 3zla:A, 3zla:B, 3zla:C, 3zla:D, 3zla:E, 3zla:F, 3zla:G, 3zla:H
13 4yut:A 351 178 0.2484 0.1140 0.2247 2.0 8qfe:A, 8qff:A, 8qfg:A, 8qfh:A, 8qfi:A, 8qfj:A, 5x4t:A, 5x4u:A, 5x4v:A, 4yus:A, 4yut:B
14 4urs:A 162 88 0.1553 0.1543 0.2841 2.7 4urg:A, 4urs:B
15 4o27:A 325 54 0.0932 0.0462 0.2778 3.6 4fzd:A, 1upk:A
16 4o7p:B 451 79 0.1366 0.0488 0.2785 4.0
17 4uc0:A 247 52 0.1056 0.0688 0.3269 7.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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