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BioLiP
>protein
GSRRIFTPHFKLQVLESYRNDNDCKGNQRATARKYNIHRRQIQKWLQCESNLRSSVANN

The query sequence (length=59) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2glo:A 59 59 1.0000 1.0000 1.0000 6.66e-40
2 6zu5:LJ0 168 49 0.2373 0.0833 0.2857 1.6
3 6c3a:A 378 50 0.2542 0.0397 0.3000 1.8 6c3a:B, 6c3c:A, 6c3c:B, 6c3d:A, 6c3d:B
4 3rqi:A 170 20 0.1864 0.0647 0.5500 1.9
5 7scd:A 371 47 0.1864 0.0296 0.2340 6.2 3bd9:A, 7sce:A
6 5e7g:A 446 57 0.2542 0.0336 0.2632 9.0
7 7sl9:A 497 23 0.0847 0.0101 0.2174 9.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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