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BioLiP
>protein
GSRLPKLYLCEFCLKYMKSRTILQQHMKKCGWF

The query sequence (length=33) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8dd5:A 272 32 0.9697 0.1176 1.0000 4.14e-17 1m36:A, 2ozu:A, 2rc4:A
2 7d0p:A 276 31 0.6667 0.0797 0.7097 2.92e-10 7d0o:A, 7d0q:A, 7d0r:A, 7d0s:A, 5gk9:A, 6maj:A, 6mak:A
3 2ou2:A 246 30 0.5455 0.0732 0.6000 6.33e-06
4 5wci:A 284 28 0.4545 0.0528 0.5357 9.56e-05 6ba2:A, 6ba4:A, 7cmr:A, 6ct2:A, 4dnc:A, 4dnc:B, 2giv:A, 5j8c:A, 5j8f:A, 6oin:A, 6oio:A, 6oip:A, 6oiq:A, 6oir:A, 6owh:A, 6owi:A, 6pd8:A, 6pd9:A, 6pda:A, 6pdb:A, 6pdc:A, 6pdd:A, 6pde:A, 6pdf:A, 6pdg:A, 2pq8:A, 3qah:A, 3toa:A, 3tob:A, 8w13:A, 2y0m:A
5 6d50:B 840 31 0.3636 0.0143 0.3871 0.72 6d50:A, 6nzg:A, 6nzg:B, 5uj6:A, 5uj6:B
6 2elr:A 36 21 0.2727 0.2500 0.4286 0.97 2rv3:A
7 2l1o:A 37 24 0.2727 0.2432 0.3750 1.1
8 2rsj:A 92 23 0.2727 0.0978 0.3913 2.5 2els:A, 2rut:A, 2rv6:A
9 2elx:A 35 29 0.3030 0.2857 0.3448 2.7 2rv5:A
10 6u4m:A 65 24 0.2727 0.1385 0.3750 3.6 6u4n:B
11 2bco:A 338 19 0.2727 0.0266 0.4737 4.0 2bco:B
12 8hfr:ox 143 21 0.2424 0.0559 0.3810 4.7 6ft6:I, 3jct:I, 6m62:I, 6n8j:I, 6n8k:I, 6n8l:I, 7ug6:I, 7uoo:I, 7uqb:I, 7uqz:I, 7v08:I, 6ylg:I, 6ylh:I, 6yly:I, 7z34:I
13 6e93:A 112 21 0.2727 0.0804 0.4286 7.0 6e94:A
14 6sga:FJ 353 20 0.2424 0.0227 0.4000 7.4 6sg9:FJ, 6sgb:FJ

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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