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BioLiP
>protein
GSQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYEDGLEY

The query sequence (length=57) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5e4w:C 105 55 0.9649 0.5238 1.0000 1.75e-33 5e4w:D, 5e4x:A
2 3ui2:A 234 54 0.9474 0.2308 1.0000 8.39e-32 3dep:A, 2hug:A
3 3ui2:A 234 45 0.3333 0.0812 0.4222 2.52e-05 3dep:A, 2hug:A
4 6irw:A 494 55 0.2982 0.0344 0.3091 0.027 6irw:B
5 7n27:A 57 42 0.3333 0.3333 0.4524 0.20 7n27:D, 7n27:B, 7n27:C, 7n27:E, 7n27:F
6 6v41:AAA 61 46 0.3509 0.3279 0.4348 0.24
7 5ejw:A 80 30 0.2632 0.1875 0.5000 0.67 5epj:A, 2kvm:A, 2l12:A, 2l1b:A, 4mn3:A, 8sii:A, 8sii:B, 6v2r:A, 4x3k:A, 4x3k:B, 4x3s:B, 4x3s:A, 4x3t:A, 4x3t:B, 4x3t:C, 4x3t:D, 4x3t:E, 4x3t:F, 4x3u:A, 4x3u:B
8 6v2d:G 64 29 0.2632 0.2344 0.5172 1.3 5jjz:A, 7slw:A, 7slw:B, 7slw:C, 7slw:D, 7slw:E, 7slw:F, 8sp6:A, 8sp6:B, 8sp6:C, 8sp6:D, 8sp6:E, 8sp6:F, 6v2d:I, 6v2d:K, 6v2d:A, 6v2d:C, 6v2d:E, 6v2h:A, 6v2h:C, 6v2h:E, 6v2h:G, 6v2h:I, 6v2h:K, 6v3n:A, 6v3n:B, 6v8w:A, 6v8w:B, 6v8w:C, 6v8w:D, 6v8w:E, 6v8w:F, 6v8w:G, 6v8w:H, 6v8w:I, 6v8w:J, 6v8w:K, 6v8w:L, 6v8w:M, 6v8w:N, 6v8w:O, 6v8w:P, 6v8w:Q, 6v8w:R, 6v8w:S, 6v8w:T, 6v8w:U, 6v8w:V, 6v8w:W, 6v8w:X, 6v8w:Y, 6v8w:Z
9 5jcs:r 333 27 0.1754 0.0300 0.3704 2.0
10 7ax7:A 205 31 0.1754 0.0488 0.3226 5.4
11 3uyy:B 337 31 0.2281 0.0386 0.4194 5.6 3uyy:A, 3uzb:A, 3uzb:B, 3uzb:C, 3uzb:D, 3uzo:A, 3uzo:B
12 8wkj:A 391 19 0.1404 0.0205 0.4211 7.1
13 6gmo:A 439 15 0.1930 0.0251 0.7333 7.1 6gmo:B, 2gwc:A, 2gwc:B, 2gwc:C, 2gwc:D, 2gwc:E, 2gwc:F, 2gwc:G, 2gwc:H, 2gwd:A
14 7vyw:A 47 24 0.1404 0.1702 0.3333 8.1
15 3qo2:A 61 45 0.2807 0.2623 0.3556 8.7 7m5u:A, 3qo2:D, 3qo2:B, 3qo2:C, 3r93:A, 3r93:D, 3r93:B, 3r93:C, 3svm:A, 6v2s:A, 6v2s:B
16 8bwy:C 4264 39 0.2105 0.0028 0.3077 9.1
17 8g6p:A 508 33 0.1754 0.0197 0.3030 9.2
18 7moq:C 4159 39 0.2105 0.0029 0.3077 9.7 6zyy:C
19 3gv6:A 56 20 0.1404 0.1429 0.4000 10.0 3i90:A, 3i90:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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