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BioLiP
>protein
GSQQKRAFEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLCNE
PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQHRQFQARVSRQ

The query sequence (length=149) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3si5:A 152 149 1.0000 0.9803 1.0000 2.51e-110 3si5:B
2 4a1g:B 149 142 0.3691 0.3691 0.3873 1.37e-32 4a1g:A, 4a1g:C, 4a1g:D
3 8v87:8 477 117 0.1879 0.0587 0.2393 0.040 7nac:8, 7nad:8, 7naf:8, 7r6k:8, 7r72:8, 7r7a:8
4 8e5t:6 514 50 0.1074 0.0311 0.3200 1.2
5 5jxt:M 324 36 0.0805 0.0370 0.3333 1.6 5jxt:N, 5jxt:O, 5jxt:J, 5jxt:K, 5jxt:I, 5jxt:H
6 6c8v:A 312 70 0.1342 0.0641 0.2857 1.7
7 7exk:A 217 59 0.1074 0.0737 0.2712 2.6 7exk:B, 7exk:C, 7exk:D, 7exk:E, 7exk:F
8 6yxy:BE 407 31 0.0671 0.0246 0.3226 2.8 7aoi:BE, 6hiv:BE, 6hix:BE, 6yxx:BE
9 4i9e:A 383 37 0.0872 0.0339 0.3514 5.8 4i9c:A, 4i9e:B, 3ulq:A
10 5aja:B 84 37 0.0872 0.1548 0.3514 7.4 4z8l:B, 4z8l:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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