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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GSQLKRLKASLREQGLIGPQKSKKQKRQNANDQKAEALKSIREQFNPFQFKTNARGPKFEVTTNVIKGRPELSRARSEEK
RRQTILVEMQRRNKVGGIIDRRTEEEKAAEAAKKLQELEEKRLKRMRGKERLGNFSQVLIHHIAYLGDRFQPHWFPTLEQ
LSRHVHSLAKTFPIEVAKAYRMRIQEMEEHRPLAPTVGDLVILTAIGTTFPTSDHFHQVCTPAMLAIARYLGQKVPAALS
DFAVGIYLSILALQYQDFAKRYVPEMMNFLLNTLCALAPERAKSKLGNFPVHEPPAGIRIKDATNTPIRQLNCGDCLRKD
ELSPAETSSLQIAILSTATAILKSAADTWHKLPAFIESFQPALSVAQHLLTKPNASHLPSSLTSKLNDLASHLSRLLQLS
RLSRRPLELHHHRPLAIKTYIPKFDPDKHYDPNRERAELAKLKAEHKRERKGALRELRKDAQFIRREQLRIKKEKDEAYE
KKFKRIIAEIQNEEGRAANEYAREKAAR

The query sequence (length=508) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6rxt:UB 512 512 1.0000 0.9922 0.9922 0.0 5oql:B, 6rxu:UB, 6rxv:UB, 6rxx:UB, 6rxy:UB, 6rxz:UB
2 7d5s:RN 607 406 0.2461 0.2059 0.3079 1.16e-46 7ajt:UB, 7aju:UB, 7d4i:RN, 7d5t:RN, 7d63:RN, 6ke6:RN, 6lqp:RN, 6lqq:RN, 6lqr:RN, 6lqs:RN, 6lqt:RN, 6lqu:RN, 6lqv:RN, 6zqb:UB, 6zqc:UB, 6zqd:UB, 6zqg:UB
3 7d5s:RN 607 196 0.1004 0.0840 0.2602 8.11e-09 7ajt:UB, 7aju:UB, 7d4i:RN, 7d5t:RN, 7d63:RN, 6ke6:RN, 6lqp:RN, 6lqq:RN, 6lqr:RN, 6lqs:RN, 6lqt:RN, 6lqu:RN, 6lqv:RN, 6zqb:UB, 6zqc:UB, 6zqd:UB, 6zqg:UB
4 7suk:ST 599 405 0.2461 0.2087 0.3086 2.98e-46 5wlc:ST
5 7suk:ST 599 100 0.0650 0.0551 0.3300 1.09e-05 5wlc:ST
6 6zqa:UB 504 441 0.2480 0.2500 0.2857 1.34e-42 6zqf:UB
7 7mqa:ST 570 364 0.2008 0.1789 0.2802 3.94e-32 7mq8:ST, 7mq9:ST
8 7mqa:ST 570 59 0.0433 0.0386 0.3729 0.15 7mq8:ST, 7mq9:ST
9 5ffc:A 148 68 0.0472 0.1622 0.3529 5.9 5fej:A, 5fej:B, 5fej:C, 5fej:D, 5ffd:A, 5ffe:A, 5ffe:B
10 6thh:C 816 71 0.0394 0.0245 0.2817 9.1 6yes:A
11 5cvn:B 321 71 0.0413 0.0654 0.2958 9.5 5cvo:B, 5cvo:E, 6jlq:A
12 6cin:B 1169 57 0.0295 0.0128 0.2632 9.6 6cin:A, 6cin:C, 6cin:D, 6cin:E, 6cin:F, 6cio:A, 6cio:B, 6cio:C, 6cio:D, 6cio:E, 6cio:F, 6cip:A, 6cip:B, 6cip:C, 6cip:D, 6cip:E, 6cip:F, 6ciq:A, 6ciq:B, 6ciq:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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