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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GSQFLLSVREFMQTRYYAKKTIEAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKVATKTQSLALNSLSFLYKE
ILKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLEIVDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKG
GKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHH
MNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHSGVLSPLSRL

The query sequence (length=313) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2a3v:B 320 319 1.0000 0.9781 0.9812 0.0 2a3v:A, 2a3v:C, 2a3v:D
2 5jjv:B 356 215 0.1917 0.1685 0.2791 1.74e-12 5jjv:A, 5jk0:A, 5jk0:C, 5jk0:B, 5jk0:D
3 5dor:B 161 38 0.0639 0.1242 0.5263 3.75e-06
4 1aih:C 168 58 0.0671 0.1250 0.3621 8.98e-05
5 6emy:B 316 195 0.1470 0.1456 0.2359 1.02e-04 6emy:A, 6emz:A, 6emz:B, 6en0:A, 6en0:B, 6en1:A, 6en1:B, 6en2:A, 6en2:B
6 8a25:A 289 63 0.0543 0.0588 0.2698 1.9 8a26:A
7 5ubj:A 303 44 0.0479 0.0495 0.3409 4.0
8 3c28:A 299 118 0.1118 0.1171 0.2966 6.7
9 1nzb:A 332 118 0.1118 0.1054 0.2966 8.4 3c28:B, 3c29:A, 3c29:B, 3c29:G, 3c29:H, 1crx:B, 1crx:A, 2crx:B, 2crx:A, 3crx:B, 3crx:A, 4crx:A, 4crx:B, 5crx:A, 5crx:B, 1drg:A, 1f44:A, 2hof:A, 2hof:B, 2hoi:A, 2hoi:B, 2hoi:G, 2hoi:H, 1kbu:B, 1kbu:A, 1ma7:A, 1ma7:B, 3mgv:B, 3mgv:A, 3mgv:D, 3mgv:C, 1nzb:B, 1nzb:E, 1nzb:F, 1ouq:B, 1ouq:A, 1ouq:F, 1ouq:E, 1pvp:B, 1pvp:A, 1pvq:B, 1pvq:A, 1pvr:B, 1pvr:A, 1q3u:A, 1q3u:B, 1q3u:E, 1q3u:F, 1q3v:B, 1q3v:A, 1q3v:F, 1q3v:E, 7rhx:A, 7rhx:B, 7rhx:G, 7rhx:H, 7rhy:A, 7rhz:A, 7rhz:B, 5u91:A, 5u91:B, 5u91:E, 5u91:F, 1xns:A, 1xns:B, 1xo0:B, 1xo0:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218