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BioLiP
>protein
GSPWRLLGALCLQRPPVVSKPLTPLQEEMASLLQQIEIERSLYSDHELRALDENQRLAKKKADLHDEEDEQDILLAQDLE
DMWEQKFLQFKLGARITEADEKNDRTSLNRKLDRNLVLLVREKFGDQDVWILPQAEWQPGETLRGTAERTLATLSENNME
AKFLGNAPCGHYTFKFPQAMRTESNLGAKVFFFKALLLTGDFSQAGNKGHHVWVTKDELGDYLKPKYLAQVRRFVSDL

The query sequence (length=238) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8any:e 238 238 1.0000 1.0000 1.0000 2.13e-178 3j7y:e, 7odr:e, 7ods:e, 7odt:e, 8oir:Bv, 8oit:Bv, 8pk0:e, 7po4:e, 7qi4:e, 7qi5:e, 7qi6:e, 8qsj:e, 6zm5:e, 6zm6:e
2 8oin:Bv 238 238 0.8739 0.8739 0.8739 2.33e-158 7nsj:Bj, 8oiq:Bv
3 6nu2:e 217 237 0.9118 1.0000 0.9156 2.28e-155
4 6gaw:Bj 217 237 0.8109 0.8894 0.8143 2.04e-139 6gb2:Bj, 7nqh:Bj, 7nql:Bj, 7nsh:Bj, 7nsi:Bj, 6ydp:Bj, 6ydw:Bj
5 7of0:e 197 237 0.8277 1.0000 0.8312 2.51e-137 7of3:e, 7of5:e, 7of7:e
6 6ywe:6 273 141 0.1933 0.1685 0.3262 2.33e-12 6yws:6, 6ywv:6, 6ywx:6, 6ywy:6
7 5mrc:6 234 144 0.1891 0.1923 0.3125 3.45e-09 5mre:6, 5mrf:6
8 3j6b:6 209 144 0.1849 0.2105 0.3056 6.54e-06
9 5gg6:B 295 121 0.1387 0.1119 0.2727 0.040 5gg6:A, 5gg7:A, 5gg7:B, 5gg8:A, 5gg9:A, 5gga:A, 5ggb:A, 5ggc:A, 5ggc:B, 5ggd:A, 5ggd:B, 6m65:A, 6m69:A, 6m6y:A, 6m72:A, 5xd1:A, 5xd2:A, 5xd3:A, 5xd4:A, 5xd5:B, 5xd5:A
10 1jkn:A 165 130 0.1513 0.2182 0.2769 0.14
11 7ysf:A 113 50 0.0714 0.1504 0.3400 1.4
12 6sce:A 614 81 0.1050 0.0407 0.3086 3.1
13 8c8v:A 1032 34 0.0546 0.0126 0.3824 4.3 8c8u:A, 8c8w:A, 8c9d:A
14 6j6g:C 920 23 0.0462 0.0120 0.4783 5.5 7b9v:C, 6bk8:B, 7dco:C, 5gm6:C, 5gmk:C, 6j6h:C, 6j6n:C, 6j6q:C, 3jcm:H, 6teo:A, 6teo:C, 5wsg:C, 5y88:C, 5ylz:C, 5zwm:C, 5zwo:C
15 1ea0:A 1452 122 0.1345 0.0220 0.2623 6.1 1ea0:B
16 7nqf:B 219 33 0.0462 0.0502 0.3333 6.3 7nqe:A, 7nqf:A, 7p9j:B, 7p9j:A, 7p9j:C, 7qaz:B, 7qaz:A, 7qaz:C
17 8wi0:A 1220 55 0.0840 0.0164 0.3636 7.6 8kci:A, 8wi2:A, 8wi5:A
18 3urh:B 465 54 0.0630 0.0323 0.2778 7.8 3urh:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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