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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GSPLAQQIKNILSLISQADAAGRMDEVRTLQLNLCQLMVEYFQGSPLAQQIKNIHSFGHQAWAAGRLDEVLTIQENLYQL
MKEYFQQS

The query sequence (length=88) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7bww:A 90 89 1.0000 0.9778 0.9888 8.10e-60 7bww:B, 7bww:C, 7bww:D, 6ypi:A
2 5od9:A 95 94 0.7273 0.6737 0.6809 5.83e-36 5od1:A, 5od9:B
3 3v1d:A 48 45 0.4318 0.7917 0.8444 6.54e-22 3v1c:A, 3v1c:B, 3v1d:F, 3v1d:B, 3v1d:C, 3v1d:E, 3v1d:H, 3v1d:D, 3v1d:G, 3v1e:A, 3v1e:B, 3v1f:A, 3v1f:B
4 3v1d:A 48 45 0.4205 0.7708 0.8222 6.96e-19 3v1c:A, 3v1c:B, 3v1d:F, 3v1d:B, 3v1d:C, 3v1d:E, 3v1d:H, 3v1d:D, 3v1d:G, 3v1e:A, 3v1e:B, 3v1f:A, 3v1f:B
5 4uzs:A 687 19 0.1023 0.0131 0.4737 1.8 4ucf:A, 4ucf:B, 4ucf:C, 4uzs:B
6 6ggo:A 199 37 0.1364 0.0603 0.3243 5.0 6ggo:B
7 7k7m:B 757 55 0.2159 0.0251 0.3455 5.5 7k7m:A, 7n6b:A
8 6aji:A 873 55 0.2159 0.0218 0.3455 5.5
9 6ajf:A 901 55 0.2159 0.0211 0.3455 5.8 6ajg:A, 6ajh:A, 6ajj:A, 7c2m:A, 7c2n:A, 6or2:A, 7wnx:A
10 1gxo:A 320 35 0.1364 0.0375 0.3429 7.1
11 2bbr:A 189 31 0.1591 0.0741 0.4516 7.4
12 2ebf:X 711 80 0.1932 0.0239 0.2125 8.3 2ebh:X
13 8cd1:h 129 29 0.1136 0.0775 0.3448 9.3 6spc:h, 6spe:h, 6spf:h, 6spg:h, 7unr:h, 7unu:h, 7unv:h, 7unw:h

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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