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BioLiP
>protein
GSPEFGYWITCCPTCDVDINTWVPFYSTELNKPAMIYCSHGDGHWVHAQCMDLEERTLIHLSEGSNKYYCNEHVQIARA

The query sequence (length=79) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2jwo:A 82 79 1.0000 0.9634 1.0000 2.16e-57 8t4r:A, 2v83:A, 2v83:B, 2v83:C, 2v85:A, 2v85:B, 2v86:B, 2v86:A, 2v87:A, 2v87:B, 2v88:A, 2v88:B, 2v89:B, 2v89:A
2 8sm5:I 138 30 0.1266 0.0725 0.3333 2.8
3 2wh6:A 157 30 0.1266 0.0637 0.3333 3.3 7p33:B, 7p33:D, 7p33:A, 7p33:E, 7p9w:A, 8sm5:A, 8sm5:C, 8sm5:G, 8sm5:E, 2v6q:A, 2xpx:A
4 7lbe:C 299 29 0.1646 0.0435 0.4483 3.6 7lbf:C, 7lbg:C
5 8fia:A 1772 24 0.1266 0.0056 0.4167 4.7
6 8bz6:A 606 50 0.1899 0.0248 0.3000 5.1 8bz6:B, 8bz6:C, 8bz6:D, 8bz6:E, 8bz6:F, 8bz7:A, 8bz7:B, 8bz7:C, 8bz7:D, 8bz7:E, 8bz7:F, 8bz8:A, 8bz8:B, 8bz8:C, 8bz8:D, 8bz8:E, 8bz8:F
7 3oft:A 396 24 0.0886 0.0177 0.2917 7.5 3oft:B, 3oft:C, 3ofu:A, 3ofu:B, 3ofu:C, 3ofu:D, 3ofu:E, 3ofu:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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