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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GSPDSYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEMKSNLENIDFKMAAEEEKRLRHD
VMAHVHTFGHCCPKAAGIIHLGATSCYVGDNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTT
VGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKV
DIEVLSVLASLGASVHKICTDIRLLANLKEMEEPFEKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRR
ICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQDCHEKIRVLSQQAASVVKQEG
GDNDLIERIQADAYFSPIHSQLDHLLDPSSFTGRASQQVQRFLEEEVYPLLKPYESVMKVKAELCL

The query sequence (length=466) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5nx9:D 477 477 1.0000 0.9769 0.9769 0.0 2j91:A, 2j91:D, 2j91:B, 2j91:C, 5nx9:A, 5nx9:B, 5nxa:A, 5nxa:B, 5nxa:D, 5nxa:E, 5nxa:G, 5nxa:H, 5nxa:F, 2vd6:A, 2vd6:D, 2vd6:B, 2vd6:C
2 5nx9:C 441 453 0.9464 1.0000 0.9735 0.0
3 5nxa:C 418 463 0.8970 1.0000 0.9028 0.0
4 5vkw:B 469 462 0.6545 0.6503 0.6602 0.0
5 5eyt:A 472 470 0.5558 0.5487 0.5511 0.0
6 2x75:A 427 438 0.2318 0.2529 0.2466 3.47e-35
7 4eei:B 423 397 0.1803 0.1986 0.2116 1.62e-15 4eei:A, 5hw2:A, 5hw2:C
8 2qga:C 455 476 0.2382 0.2440 0.2332 1.37e-09 2qga:B
9 4efc:A 452 282 0.1609 0.1659 0.2660 8.46e-07 4efc:B
10 4mx2:B 439 285 0.1588 0.1686 0.2596 6.84e-06 4mx2:A, 4mx2:C, 4mx2:D, 4mx2:E, 4mx2:F, 4mx2:G, 4mx2:H
11 5xnz:A 439 246 0.1438 0.1526 0.2724 9.37e-06
12 7t29:A 453 229 0.1202 0.1236 0.2445 1.14e-05
13 3gzh:A 469 69 0.0472 0.0469 0.3188 0.002 2ptq:A, 2ptq:B, 2ptr:A, 2ptr:B
14 7c18:B 464 155 0.0858 0.0862 0.2581 0.020 7c18:A, 7c18:C, 7c18:D
15 1fuo:A 456 149 0.0794 0.0811 0.2483 0.19 1fuo:B, 1fup:A, 1fup:B, 1fuq:A, 1fuq:B
16 8hub:A 388 39 0.0279 0.0335 0.3333 0.55
17 8wo5:C6 315 22 0.0258 0.0381 0.5455 0.66 8wiw:Z, 8wiw:a, 8wiw:b, 8wiw:c, 8wiw:d, 8wiw:e, 8wiw:f, 8wiw:3, 8wiw:8, 8wiw:AM, 8wiw:AS, 8wiw:AY, 8wiw:Ae, 8wiw:Ak, 8wiw:Aq, 8wiw:Aw, 8wiw:A4, 8wiw:BA, 8wiw:BH, 8wiw:BO, 8wiw:BV, 8wiw:Bc, 8wiw:Bj, 8wiw:Bq, 8wiw:Bx, 8wiw:B5, 8wiw:CB, 8wiw:CI, 8wiw:CP, 8wiw:CW, 8wiw:Cd, 8wiw:Ck, 8wiw:Cr, 8wiw:Cy, 8wo5:DB, 8wo5:Em, 8wo5:DD, 8wo5:D7, 8wo5:DJ, 8wo5:DQ, 8wo5:DW, 8wo5:Dc, 8wo5:Di, 8wo5:Do, 8wo5:Du, 8wo5:D1, 8wo5:B5, 8wo5:By, 8wo5:EE, 8wo5:EK, 8wo5:EQ, 8wo5:EW, 8wo5:Ba, 8wo5:Bg, 8wo5:Bm, 8wo5:Bs, 8wo5:CA, 8wo5:CG, 8wo5:CM, 8wo5:CS, 8wo5:CY, 8wo5:Ce, 8wo5:Ck, 8wo5:Cq, 8wo5:Cw, 8wo5:Ea, 8wo5:Eg, 8woe:DG, 8woe:EC, 8woe:CB, 8woe:B5, 8woe:EJ, 8woe:EQ, 8woe:EX, 8woe:Bc, 8woe:Bj, 8woe:Bq, 8woe:Bx, 8woe:Ex, 8woe:CI, 8woe:CP, 8woe:CW, 8woe:Cd, 8woe:Ck, 8woe:Cr, 8woe:Cy, 8woe:Ey, 8woe:Ez, 8woe:E1, 8woe:E2, 8woe:E3, 8woe:E4, 8woe:C6, 8woe:DA, 8woe:DY, 8woe:De, 8woe:Dk, 8woe:Dq, 8woe:Dw, 8woe:D3, 8woe:D9, 8xp0:M, 8xp0:Y, 8xp0:S, 8xp1:Z, 8xp1:a, 8xp1:b, 8yjt:k, 8yjt:Cw, 8yjt:q, 8yjt:w, 8yjt:3, 8yjt:9, 8yjt:AE, 8yjt:AK, 8yjt:AQ, 8yjt:AW, 8yjt:Ac, 8yjt:Ai, 8yjt:Ao, 8yjt:Au, 8yjt:A1, 8yjt:A7, 8yjt:BC, 8yjt:BI, 8yjt:BO, 8yjt:BU, 8yjt:Ba, 8yjt:Bg, 8yjt:Bm, 8yjt:Bs, 8yjt:By, 8yjt:B5, 8yjt:CA, 8yjt:CG, 8yjt:CM, 8yjt:CS, 8yjt:CY, 8yjt:Ce, 8yjt:Ck, 8yjt:Cq
18 4hor:A 482 109 0.0472 0.0456 0.2018 1.0 4hos:A, 4hot:A
19 5bof:A 434 127 0.0730 0.0783 0.2677 1.3 5boe:A, 5boe:B, 5bof:B
20 7lub:B 462 290 0.1330 0.1342 0.2138 3.6 7lub:A
21 2oba:B 121 47 0.0343 0.1322 0.3404 3.7 2oba:A, 2oba:C, 2oba:D, 2oba:E, 2oba:F
22 6dbb:A 504 98 0.0665 0.0615 0.3163 3.9 6dbb:B, 6dbb:C
23 7kaa:A 152 36 0.0300 0.0921 0.3889 6.3
24 5jj2:A 211 54 0.0408 0.0900 0.3519 7.4
25 9em9:A 512 75 0.0472 0.0430 0.2933 8.2 9em9:B
26 1jq3:A 295 34 0.0279 0.0441 0.3824 8.4 1jq3:C, 1jq3:D
27 1gl4:A 273 29 0.0236 0.0403 0.3793 8.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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