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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GSNEIKRGAVDLIKTGVNEKAMAGAVFSLFKKDGTEVKKELATDANGHIRVQGLEYGEYYFQETKAPKGYVIDPTKREFF
VKNSGTINEDGTITSGTVVKMEVKNNEEPTIDKKINGKLEALPINPLTNYNYDIKTLIPEDIKEYKKYVVTDTLDNRLVI
QGKPIVKIDGAEVNANVVEVAIEGQKVTATVKDFTKMDGKKEFHLQIKSQVKEGVPSGSEILNTAKIHFTNKNDVIGEKE
SKPVVVIPTTGIIELTKIDSANKNKMKGAEFVLKDNNGKIVVVAGKEVTGVSDENGVIKWSNIPYGDYQIFETKAPTYTK
EDGTKTSYQLLKDPIDVKISENNQTVKLTIENNKS

The query sequence (length=355) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3kpt:B 355 355 1.0000 1.0000 1.0000 0.0
2 6fwv:A 522 351 0.2394 0.1628 0.2422 1.32e-07 6fwv:B
3 6fwv:A 522 87 0.0845 0.0575 0.3448 0.001 6fwv:B
4 4hss:A 411 284 0.2225 0.1922 0.2782 6.30e-05 4hsq:A, 4hss:B
5 4uzg:A 277 159 0.1352 0.1733 0.3019 3.73e-04
6 4uzg:A 277 75 0.0732 0.0939 0.3467 0.039
7 3pf2:A 317 140 0.1070 0.1199 0.2714 0.004 3pg2:A, 3pg2:B
8 3pf2:A 317 297 0.1859 0.2082 0.2222 3.0 3pg2:A, 3pg2:B
9 6m48:A 813 83 0.0761 0.0332 0.3253 0.018 6m3y:A, 6m48:B
10 6m48:A 813 84 0.0761 0.0332 0.3214 0.37 6m3y:A, 6m48:B
11 6s6t:A 1472 156 0.1211 0.0292 0.2756 0.40 6s6s:A, 6s6s:B, 6s6s:C, 6s6s:D, 6s6t:B, 6s6t:C, 6s6t:D, 6s6u:A, 6s6u:B, 6s6u:C, 6s6u:D, 6s6u:E, 6s6u:F, 6s6x:A, 6s6x:B, 6s6x:C, 6s6x:D, 6s6x:E, 6s6x:F, 2vdc:A, 2vdc:B, 2vdc:C, 2vdc:D, 2vdc:E, 2vdc:F
12 1ea0:A 1452 156 0.1211 0.0296 0.2756 0.41 1ea0:B
13 2ww8:A 815 81 0.0704 0.0307 0.3086 0.65
14 2ww8:A 815 72 0.0535 0.0233 0.2639 6.5
15 3qdh:A 271 104 0.0873 0.1144 0.2981 0.93
16 3qdh:A 271 46 0.0451 0.0590 0.3478 5.8
17 4p0d:A 471 57 0.0451 0.0340 0.2807 2.1
18 4p0d:A 471 64 0.0535 0.0403 0.2969 2.3
19 5tth:A 671 75 0.0648 0.0343 0.3067 2.5 6d14:A, 7exp:A, 4ipe:A, 4ivg:A, 4iyn:A, 4j0b:A, 4mli:A, 4mli:C, 4mls:A, 5tvu:A, 5tvw:A, 5tvx:A
20 6dt1:A 464 98 0.0789 0.0603 0.2857 2.5 6dt1:E
21 8vdk:A 432 59 0.0423 0.0347 0.2542 3.0
22 7kgz:B 634 21 0.0282 0.0158 0.4762 3.5 7kgz:A
23 1ova:A 385 68 0.0507 0.0468 0.2647 4.4
24 3tqj:A 192 26 0.0338 0.0625 0.4615 4.7 3tqj:B
25 2f7f:A 482 81 0.0704 0.0519 0.3086 8.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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