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BioLiP
>protein
GSMSISISYSTTYSGWTVADYLADWSAYFGDTGGFNPGPFDGSQYALQSTASDAAFIAGGDLHYTLFSNPSHTLWGKLDS
IALGDTLTGGASSGGYALDSQEVSFSNLGLDSPIAQGRDGTVHKVVYGLMSGDSSALQGQIDALLKAVDPSLSINSTFDQ
LAAAGVAHATPA

The query sequence (length=172) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7emo:A 186 185 0.9942 0.9194 0.9243 3.93e-116 3ell:A, 3ell:B, 7emo:B, 7emo:C, 7emp:A, 7emp:B, 7emp:C, 7emq:A, 7emq:B, 7emq:C, 7emr:A, 7emr:B, 7emr:C, 7ems:A, 7ems:B, 7ems:C, 7emt:A, 7emu:A, 7emv:A, 7emw:A, 5iqx:A, 6jlg:A, 6jlg:E, 6jlg:B, 6jlg:C, 6jlg:D, 6jlg:F, 6jlg:G, 6jlg:H, 3mol:A, 3mol:B, 3mom:A, 3mom:B, 4o6q:A, 4o6s:A, 4o6t:A, 4o6u:A, 6u87:A, 6urb:A, 6urb:B, 7vf7:A, 7vf7:B, 7vf7:C, 7vf8:A, 7vf8:B, 7vm1:A, 7vm1:B, 7vm1:C, 7vm1:D, 3w8m:A, 3w8o:A, 3w8o:B, 3wah:A, 3wah:B, 5xa4:A, 5xa4:B, 5xhl:A, 5xhl:B, 5xib:A, 5xib:B, 5xic:A, 5xic:B, 5xic:C, 5xic:D, 5xie:A, 5xie:B, 5xkb:A, 5xkb:B
2 8ki1:A 181 182 0.7674 0.7293 0.7253 1.63e-87 8ki0:A, 8ki0:B, 8ki1:B
3 2uyd:X 174 175 0.4884 0.4828 0.4800 8.44e-46 1b2v:A, 5c58:B, 2cn4:A, 2cn4:B, 3ddr:C, 3ddr:D, 1dk0:A, 1dk0:B, 1dkh:A
4 4jet:A 179 183 0.3081 0.2961 0.2896 4.72e-16 4jet:B, 4jet:C, 4jet:D, 4jet:E, 4jet:F, 4jet:G, 4jet:H, 4jet:I, 4jet:J, 4xzd:A, 4xzd:D, 4y1q:A, 4y1q:B, 4y1q:D, 4y1q:G, 4y1q:I, 4y1q:K, 4y1q:M, 4y1q:O
5 4y4s:A 155 166 0.2849 0.3161 0.2952 2.11e-15
6 3otb:A 237 106 0.1686 0.1224 0.2736 0.020 3otb:B
7 3m6i:A 358 107 0.1512 0.0726 0.2430 0.28 3m6i:B
8 7yyp:A 597 60 0.1221 0.0352 0.3500 0.93 7yzn:A, 7zag:7, 7zah:7, 7zki:7
9 7jux:A 278 27 0.0640 0.0396 0.4074 2.6 9axh:C, 9axh:D, 7juw:B, 7juy:B, 7juz:A, 7jv0:A, 7jv1:D
10 7t7u:D 168 55 0.1221 0.1250 0.3818 4.9 4lms:B, 4lms:D, 7t7u:B
11 6m8n:A 367 50 0.0930 0.0436 0.3200 5.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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