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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GSMRICIFMARGLEGCGVTKFSLEQRDWFIKNGHEVTLVYAKDKSFTRTSSHDHKSFSIPVILAKEYDKALKLVNDCDIL
IINSVPATSVQEATINNYKKLLDNIKPSIRVVVYQHDHSVLSLRRNLGLEETVRRADVIFSHSVYNFQPPMDIVKVRSTY
WKDVSEINMNINRWIGRTTTWKGFYQMFDFHEKFLKPAGKSTVMEGLERSPAFIAIKEKGIPYEYYGNREIDKMNLAPNQ
PAQILDCYINSEMLERMSKSGFGYQLSKLNQKYLQRSLEYTHLELGACGTIPVFWKSTGENLKFRVDNTPLTSHDSGIIW
FDENDMESTFERIKELSSDRALYDREREKAYEFLYQHQDSSFCFKEQFDIITK

The query sequence (length=373) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1ya6:A 380 380 0.9973 0.9789 0.9789 0.0 1y8z:B, 1ya6:B
2 1xv5:A 401 401 0.9973 0.9277 0.9277 0.0 1y6f:A, 1y6f:B, 1y6g:A, 1y6g:B, 1y8z:A
3 5fvc:D 369 35 0.0375 0.0379 0.4000 1.0 5fvc:A, 5fvc:B, 5fvc:C, 5fvc:E, 5fvc:F, 5fvc:G, 5fvc:H, 5fvc:I, 5fvc:J, 5fvd:A, 5fvd:C, 8pdl:A, 8pdm:A, 8pdn:A, 8pdn:B, 8pdn:C, 8pdn:D, 8pdn:E, 8pdn:F, 8pdn:G, 8pdn:H, 8pdn:I, 8pdn:J, 8pdn:K, 8pdn:L, 8pdo:A, 8pdo:B, 8pdp:A, 8pdq:A, 8pdr:A, 8pdr:B, 8pdr:C, 8pdr:D, 8pdr:E, 8pdr:F, 8pdr:G, 8pdr:H, 8pdr:I, 8pdr:J, 8pdr:K, 8pds:A, 8pds:C
4 3qay:A 180 47 0.0402 0.0833 0.3191 3.1 3qay:B, 3qay:C, 3qay:D
5 1kao:A 167 58 0.0509 0.1138 0.3276 3.6 2rap:A, 3rap:R, 3rap:S
6 7d6n:D 589 103 0.0777 0.0492 0.2816 3.7 7d6n:A, 7d6n:B, 7d6n:E, 7d6n:C, 7d6n:F, 7d6n:G, 7d6n:J, 7d6n:I, 7d6n:H
7 7d4k:A 444 85 0.0563 0.0473 0.2471 4.5 7d4k:B, 7d4m:A, 7d4m:B, 7d4n:A, 7d4n:B
8 3c3d:A 306 35 0.0349 0.0425 0.3714 7.2 3c3d:B, 3c3d:C, 3c3d:D, 3c3e:A, 3c3e:B, 3c3e:C, 3c3e:D
9 3ryk:A 175 61 0.0483 0.1029 0.2951 8.8 3ryk:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218