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BioLiP
>protein
GSMNKLYIGNLSENAAPSDLESIFKDAKIPVSGPFLVKTGYAFVDCPDESWALKAIEALSGKIELHGKPIEVEHSVPKRQ
RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE

The query sequence (length=159) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7vsj:A 160 158 0.9371 0.9313 0.9430 1.81e-112 6fqr:A, 6gx6:A, 7yew:A, 7yew:C, 7yex:A
2 7qde:B 169 158 0.2516 0.2367 0.2532 1.87e-07 7qdd:B
3 4qqb:A 169 111 0.2138 0.2012 0.3063 3.67e-07 1b7f:A, 1b7f:B, 4qqb:B
4 4qqb:A 169 75 0.1195 0.1124 0.2533 8.5 1b7f:A, 1b7f:B, 4qqb:B
5 1fnx:H 174 157 0.2579 0.2356 0.2611 8.17e-07 1fxl:A, 1g2e:A
6 1fnx:H 174 74 0.1447 0.1322 0.3108 3.02e-04 1fxl:A, 1g2e:A
7 8i0v:4 161 161 0.2704 0.2671 0.2671 2.11e-06
8 7uj1:B 270 144 0.2390 0.1407 0.2639 2.27e-05 7pu5:B, 7pu5:D, 7pu5:H, 7pu5:J, 7pu5:L, 7sp0:B, 7uj1:A
9 7q33:A 93 79 0.1384 0.2366 0.2785 4.53e-05 6pai:D, 6q0r:D, 6q0v:D, 6q0w:D, 6sj7:C, 6ud7:C, 6ue5:C
10 7q33:A 93 76 0.1572 0.2688 0.3289 2.35e-04 6pai:D, 6q0r:D, 6q0v:D, 6q0w:D, 6sj7:C, 6ud7:C, 6ue5:C
11 3lqv:B 115 73 0.1447 0.2000 0.3151 7.95e-05 2f9j:B, 3lqv:A, 7q4o:F, 8qo9:B6, 8qxd:B6, 8qzs:B6, 8r08:B6, 8r09:B6, 8r0a:B6, 8r0b:B6, 8rm5:B6
12 2mkc:A 118 83 0.1321 0.1780 0.2530 0.001 2my3:A
13 7dco:X 128 83 0.1321 0.1641 0.2530 0.001 5gm6:V, 5zwm:X
14 7dco:4 174 158 0.2264 0.2069 0.2278 0.002 6g90:R, 5gm6:e, 5nrl:R, 7oqb:R, 7oqe:R, 5zwm:4
15 6hpj:B 84 72 0.0755 0.1429 0.1667 0.008
16 6r5k:H 394 163 0.2704 0.1091 0.2638 0.012 6r5k:D, 6r5k:F
17 6r5k:H 394 166 0.2327 0.0939 0.2229 0.027 6r5k:D, 6r5k:F
18 2i2y:A 150 73 0.1509 0.1600 0.3288 0.015 9asq:H, 5bmg:A, 5bmg:B, 5bmg:H, 5bmg:D, 5bmg:E, 5bmg:F, 5bmg:G, 5bmh:A, 3v3x:C, 3v3x:D
19 2n7c:A 89 75 0.1006 0.1798 0.2133 0.015
20 2n7c:A 89 80 0.1447 0.2584 0.2875 0.021
21 4ed5:B 169 74 0.1321 0.1243 0.2838 0.018 4ed5:A
22 5vsu:A 387 72 0.1509 0.0620 0.3333 0.021 6aso:A, 2kh9:A, 4n0t:A, 5tf6:A, 5tf6:C
23 6m75:A 167 152 0.2453 0.2335 0.2566 0.059
24 7ypn:D 455 121 0.1698 0.0593 0.2231 0.48 7ypm:A, 7ypm:B, 7ypm:D, 7ypm:C, 7ypn:B
25 3smz:A 280 119 0.2138 0.1214 0.2857 1.9
26 3da3:A 270 39 0.0881 0.0519 0.3590 2.0 3da3:B, 2xmx:A, 2xmx:B
27 8xxm:3G 84 63 0.1132 0.2143 0.2857 2.8 5k0y:O, 8pj1:o, 8pj2:o, 8pj3:o, 8pj4:o, 8pj5:o, 8pj6:o
28 7ufr:A 1038 72 0.1384 0.0212 0.3056 3.1 7ufr:B, 7ufr:C, 7ufr:D, 7ufu:A, 7ufu:B, 7ufu:C, 7ufu:D
29 1rk8:A 87 79 0.1321 0.2414 0.2658 3.2
30 2qyo:A 353 56 0.1132 0.0510 0.3214 3.8 2qyo:B
31 8fli:B 458 67 0.1321 0.0459 0.3134 3.9 6me0:C, 6mec:C
32 5x8p:v 190 75 0.1258 0.1053 0.2667 4.3 5mmj:v, 5mmm:v, 5x8r:v
33 8fia:A 1772 43 0.0881 0.0079 0.3256 5.6
34 7sva:A 792 61 0.1132 0.0227 0.2951 6.7 7swf:A, 7swq:A
35 7mq8:NI 234 31 0.0818 0.0556 0.4194 7.2 7mq9:NI, 7mqa:NI
36 7ynd:A 1567 42 0.1006 0.0102 0.3810 8.5
37 8wmc:A 1249 42 0.1006 0.0128 0.3810 8.9
38 7y9x:A 1458 42 0.1006 0.0110 0.3810 8.9 8gs2:A
39 6gd2:A 84 72 0.1069 0.2024 0.2361 9.2 6g2k:A, 6g2k:B, 6gc5:A, 6gc5:B, 6gc5:C, 6gc5:D, 6gd2:B, 6gd3:B, 6gd3:C
40 8eex:A 1284 42 0.1006 0.0125 0.3810 9.3
41 8eey:A 1544 42 0.1006 0.0104 0.3810 9.4 7yna:A, 7ynb:A, 7ync:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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