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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GSMKTIKVKNKTEGSKVAFRMLEEEITFGAKTLGLATGSTPLELYKEIRESHLDFSDMVSINLDEYVGLSADDKQSYAYF
MKQNLFAAKPFKKSYLPNGLAADLAKETEYYDQILAQYPIDLQILGIGRNAHIGFNEPGTAFSSQTHLVDLTPSTIAANS
RFFEKAEDVPKQAISMGLASIMSAKMILLMAFGEEKAEAVAAMVKGPVTEEIPASILQTHPKVILIVDEKAGAGI

The query sequence (length=235) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2ri1:A 235 235 1.0000 1.0000 1.0000 4.23e-174 2ri1:B
2 2bkv:B 242 240 0.4255 0.4132 0.4167 2.42e-62 2bkv:A, 2bkx:A, 2bkx:B
3 1dea:A 266 205 0.3362 0.2970 0.3854 1.19e-42 1dea:B, 1fqo:A, 1fqo:B, 1hor:A, 1hor:B, 1hot:A, 2wu1:A, 2wu1:B
4 5hj5:B 267 205 0.3447 0.3034 0.3951 4.35e-42 5hj5:A, 5hj5:C, 5hj5:D
5 1ne7:A 281 243 0.3532 0.2954 0.3416 2.09e-37 1ne7:B, 1ne7:C, 1ne7:E, 1ne7:F, 1ne7:D
6 3hn6:A 271 245 0.3617 0.3137 0.3469 7.01e-37 3hn6:B, 3hn6:F, 3hn6:D, 3hn6:E
7 3e15:D 295 125 0.1362 0.1085 0.2560 0.25
8 4tm7:A 243 116 0.1404 0.1358 0.2845 0.26
9 3e7f:B 263 195 0.1830 0.1635 0.2205 0.45 3e7f:A, 3eb9:A, 3eb9:B, 2j0e:A, 2j0e:B
10 6owu:F 143 46 0.0681 0.1119 0.3478 2.7
11 7xpo:A 344 82 0.0894 0.0610 0.2561 4.0 7xpo:B, 7xpp:B, 7xpp:A, 7xpq:A, 7xpq:B
12 7ryr:A 389 70 0.0851 0.0514 0.2857 4.2 7ru0:A, 7ru0:B, 7ru0:C, 7ru0:D, 7ryr:C, 7ryr:D, 7ryr:B, 7rys:A, 7rys:B, 7rys:C, 7rys:D
13 2ixu:A 338 42 0.0723 0.0503 0.4048 4.4 2ixv:A, 2j8f:A, 2j8g:A, 1oba:A
14 6unz:A 539 64 0.0723 0.0315 0.2656 4.9 5l2r:A, 5l2r:B, 6msn:A, 6msn:B, 6unz:B, 6unz:C, 6unz:D, 6unz:E, 6unz:F, 6unz:G, 6unz:H, 6uo0:A, 6uo0:B, 6uoi:A, 6uoi:B, 6uoj:A, 6uoj:B, 6up9:A, 6up9:B, 6upm:A, 6upm:B, 6upo:A, 6upo:B, 6uq8:A, 6uq8:B, 6uq9:A, 6uq9:B, 6uqb:A, 6uqb:B, 6uql:A, 6uql:B, 6uqm:A, 6uqm:B, 6uqn:A, 6uqn:B
15 8vt9:A 406 70 0.0851 0.0493 0.2857 4.9 6cjq:A, 6cjq:B, 6cjq:C, 6cjq:D, 6cjt:A, 6cjt:B, 6cjt:C, 6cjt:D, 6cju:A, 6cju:B, 6cju:C, 6cju:D, 4d7s:A, 4d7s:B, 4d7t:A, 7rsh:A, 7rsh:B, 7rsh:C, 7rsh:D, 7rtf:A, 7rtf:B, 7rtf:C, 7rtf:D, 7rtj:A, 7rtj:B, 7rtj:C, 7rtj:D, 7tj5:A, 7tj5:B, 7tj5:C, 7tj5:D, 7tj6:A, 7tj6:B, 7tj6:C, 7tj6:D, 7tkt:A, 7tkt:B, 7tkt:C, 7tkt:D, 8vt9:D, 8vt9:B, 8vt9:C, 8vta:A, 8vta:B, 8vta:C, 8vta:D, 8vtb:A, 8vtb:B, 8vtb:C, 8vtb:D, 6vxz:A, 6vxz:B, 6vxz:C, 6vxz:D
16 5j32:A 369 32 0.0638 0.0407 0.4688 5.7 5j32:B, 5j32:C, 5j32:D, 5j33:A, 5j33:B, 5j33:C, 5j33:H, 5j33:D, 5j33:F, 5j33:E, 5j33:G, 5j34:A, 5j34:B, 5j34:C, 5j34:D
17 9bh5:CX 119 31 0.0511 0.1008 0.3871 6.0 9cai:CX
18 2eq6:A 460 17 0.0553 0.0283 0.7647 7.5 2eq6:B, 2eq8:A, 2eq8:B, 2eq8:D, 2eq8:E, 2eq9:A, 2eq9:B, 2eq9:D, 2eq9:E, 2eq9:G, 2eq9:H, 2eq9:J, 2eq9:K
19 5xc2:B 720 15 0.0468 0.0153 0.7333 8.0 5xbz:A, 5xbz:B, 5xc2:A, 5xc2:C
20 5xc2:D 648 15 0.0468 0.0170 0.7333 8.6
21 2bvf:A 453 57 0.0596 0.0309 0.2456 8.8 2bvf:B, 2bvg:A, 2bvg:B, 2bvg:C, 2bvg:D, 2bvh:A, 2bvh:B, 2bvh:C, 2bvh:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218