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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GSMEPEEYRERGREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDIERIIMPGVVHWQSPHMHA
YYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALL
AARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPV
FVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVK
DKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFE
IPAKRHLGLVVFRLKGPNSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRDAATLILSQ

The query sequence (length=478) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4e1o:C 481 478 1.0000 0.9938 1.0000 0.0 4e1o:A, 4e1o:B, 4e1o:D, 4e1o:E, 4e1o:F, 7eiw:A, 7eiw:B, 7eix:A, 7eix:B, 7eiy:A, 7eiy:B
2 8ora:A 480 476 0.5188 0.5167 0.5210 0.0 8or9:A
3 1js3:A 464 475 0.5000 0.5151 0.5032 6.48e-180 1js3:B, 1js6:A, 1js6:B
4 3rbf:A 443 474 0.4791 0.5169 0.4831 5.02e-172 3rch:B
5 6eei:B 471 483 0.4184 0.4246 0.4141 1.20e-135 6eei:A
6 6eew:A 479 480 0.4142 0.4134 0.4125 2.10e-127 6eew:B, 6eew:C, 6eew:D
7 6eem:B 488 499 0.4205 0.4119 0.4028 8.65e-123 6eem:A
8 6khn:A 490 493 0.3598 0.3510 0.3489 6.21e-111 6khn:B, 6kho:A, 6kho:B, 6khp:A, 6khp:B
9 7xin:A 470 479 0.3787 0.3851 0.3779 3.13e-105 7xin:C, 7xin:E
10 4obv:C 471 408 0.2531 0.2569 0.2966 2.11e-52 4obu:E, 4obu:A, 4obu:U, 4obu:G, 4obu:H, 4obu:F, 4obu:B, 4obu:C, 4obv:D, 4obv:B, 4obv:A
11 5o5c:B 468 426 0.2218 0.2265 0.2488 8.23e-37 5o5c:A, 5o5c:C, 5o5c:D, 5o5c:E, 5o5c:F
12 4riz:C 476 404 0.2469 0.2479 0.2921 2.19e-36 4riz:A, 4riz:D, 4rj0:D, 4rlg:A, 4rlg:B, 4rlg:D, 4rlg:C, 4rm1:B, 4rm1:C
13 6enz:A 487 378 0.2218 0.2177 0.2804 2.25e-35 6enz:B
14 2okj:B 504 326 0.1987 0.1885 0.2914 2.83e-32 2okj:A, 3vp6:A, 3vp6:B
15 2okk:A 483 329 0.1778 0.1760 0.2584 7.85e-31
16 2jis:B 487 320 0.1778 0.1745 0.2656 5.43e-28 2jis:A, 6zek:A, 6zek:B, 6zek:C, 6zek:D
17 3f9t:A 394 137 0.0711 0.0863 0.2482 2.68e-06 3f9t:B, 6ldr:A, 6lds:A, 6ldt:A
18 5hsj:A 606 164 0.0753 0.0594 0.2195 0.001 5hsj:B
19 5eud:A 454 175 0.0837 0.0881 0.2286 0.030 5eud:B, 5eue:A, 5eue:B, 3mad:A, 3mad:B, 3mau:A, 3mau:B, 3mau:C, 3mau:D, 3mbb:A, 3mbb:B
20 7cim:A 524 271 0.1234 0.1126 0.2177 0.071 7cig:A, 7cig:B, 7cii:A, 7cii:B, 7cij:A, 7cij:B, 7cim:B
21 5wt6:A 366 72 0.0460 0.0601 0.3056 0.25 7cet:A, 7ceu:A, 6kg0:A, 6kg1:A, 5wt2:A, 5wt4:A, 7xeq:A, 7xes:A
22 4atb:A 334 63 0.0460 0.0659 0.3492 0.38 4at8:A, 4at8:C, 4at9:A, 4atb:C
23 8jzd:A 166 45 0.0418 0.1205 0.4444 1.2 8jzd:C
24 5x7g:A 700 61 0.0397 0.0271 0.3115 1.3 5x7h:A
25 7cx0:B 603 317 0.1506 0.1194 0.2271 2.6 7cwz:A, 7cwz:B, 7cwz:C, 7cx0:A, 7cx0:C, 7cx1:A, 7cx1:B, 7cx1:C
26 7dlw:B 419 102 0.0523 0.0597 0.2451 2.7 7dlw:A, 7dlw:C, 7dlw:D, 7dly:A, 7dly:B
27 5k1r:B 440 170 0.0732 0.0795 0.2059 4.6 5k1r:A
28 1b8g:B 425 101 0.0607 0.0682 0.2871 6.7 1b8g:A, 1m4n:A, 1m7y:A, 3piu:A, 1ynu:A
29 5z9s:A 765 79 0.0377 0.0235 0.2278 6.8 5z9s:B
30 2dyk:A 150 63 0.0418 0.1333 0.3175 8.0 2dyk:B
31 1bli:A 481 97 0.0335 0.0333 0.1649 8.9 1ob0:A, 6toy:A, 6toz:A, 6tp0:A, 6tp1:A, 6tp2:A
32 8c9s:A 223 51 0.0335 0.0717 0.3137 9.6 8c9s:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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