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BioLiP
>protein
GSMEKLAEIMQEIIEAYQEVKDAFFKFIKAVHEGAPEEELKKYLEKMKEALEKMKELLERLEKEAKKVIEENKDKKLELK
VLLMLRLAYLLLKVSIELTKIAAEKLGDKELVEELEKESKEVEKKIKELEERIKKLLEEVDDEELKEAYKEVEEMEKEAE
KFLEKMR

The query sequence (length=167) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8gji:A 167 167 1.0000 1.0000 1.0000 4.92e-102
2 8gjg:A 162 151 0.3293 0.3395 0.3642 5.50e-04
3 8jh6:A 126 116 0.1976 0.2619 0.2845 0.19 8jh6:B, 6w70:A, 6w70:C
4 8fit:A 229 80 0.1976 0.1441 0.4125 0.68 8fit:C
5 2ct8:A 465 140 0.2455 0.0882 0.2929 1.6 2csx:A, 2csx:B, 2ct8:B
6 4nas:B 399 33 0.0898 0.0376 0.4545 1.9 4nas:A, 4nas:C, 4nas:D
7 7cpl:A 358 123 0.1916 0.0894 0.2602 2.0 7cpk:A, 6lps:A, 2uwf:A, 8xy0:A, 8y1m:A, 8y1m:B
8 7s37:P 1033 63 0.1078 0.0174 0.2857 3.7 7s3h:P
9 7z4j:B 1345 63 0.1078 0.0134 0.2857 3.9 6aeb:B, 6aeb:F, 6aeg:B, 6ai6:A, 5b2t:B, 5fw2:B, 5fw3:B, 8fzt:E, 6k4p:B, 6k4q:B, 8kah:B, 8kai:B, 8kaj:B, 8kak:B, 8kak:F, 8kal:B, 8kal:G, 8kam:B, 7ox7:B, 7ox8:B, 7ox9:B, 7oxa:B, 7qqo:B, 7qqp:B, 7qqq:B, 7qqr:B, 7qqs:B, 7qqt:B, 7qqu:B, 7qqv:B, 7qqx:B, 7qqz:B, 7qr0:B, 7qr1:B, 7qr5:B, 7qr7:B, 7qr8:B, 8wuv:A, 8ygj:A
10 5xbl:A 1320 63 0.1078 0.0136 0.2857 3.9
11 5y36:A 1368 63 0.1078 0.0132 0.2857 3.9 5f9r:B, 6ifo:A, 6ifo:B, 6mcb:A, 6mcc:A, 7s36:P, 7s38:P, 7s4x:A, 7v59:B, 7v59:E, 5vw1:A, 5vzl:A, 8ye6:A, 8ye9:A, 7z4c:B, 7z4e:B, 7z4k:B, 4zt0:A
12 6o0y:A 1146 63 0.1078 0.0157 0.2857 3.9
13 5b2r:B 1319 63 0.1078 0.0136 0.2857 4.0 5b2s:B, 5fq5:B, 5fw1:B, 8g1i:A, 6k3z:B, 6k4s:B, 6k4u:B, 6k57:B, 7qqw:B, 4un3:B, 4un4:B, 4un5:B, 8wus:A, 8wut:A, 8wuu:A
14 8kag:B 1346 63 0.1078 0.0134 0.2857 4.0 8kah:F, 8kai:F, 8kaj:F, 8spq:A, 8sqh:A, 8srs:A, 8tzz:A, 8u3y:A, 6vpc:B, 7z4h:B, 7z4i:B, 7z4l:B, 4zt9:A
15 6o0z:A 1288 63 0.1078 0.0140 0.2857 4.0
16 8t6x:A 1278 63 0.1078 0.0141 0.2857 4.1
17 8t78:A 863 63 0.1078 0.0209 0.2857 4.1
18 8t7s:A 1312 63 0.1078 0.0137 0.2857 4.1
19 7s4v:A 1122 63 0.1078 0.0160 0.2857 4.2 6o0x:A, 8t6p:A
20 8t6y:A 1148 63 0.1078 0.0157 0.2857 4.2 8t6o:A, 8t79:A
21 4oo8:A 1301 63 0.1078 0.0138 0.2857 4.2 4zt0:C
22 7s4u:A 1092 63 0.1078 0.0165 0.2857 4.3
23 4cmq:B 1168 63 0.1078 0.0154 0.2857 4.3 4cmp:B, 4cmq:A
24 8t6s:A 962 63 0.1078 0.0187 0.2857 4.3
25 7z4d:B 1259 63 0.1078 0.0143 0.2857 4.3
26 4oo8:D 1163 63 0.1078 0.0155 0.2857 4.4
27 8t77:A 1025 63 0.1078 0.0176 0.2857 4.4
28 4zt9:C 1160 63 0.1078 0.0155 0.2857 4.5
29 7z4g:B 1188 63 0.1078 0.0152 0.2857 4.5 7zo1:B
30 8t76:A 1088 63 0.1078 0.0165 0.2857 4.5
31 8t6t:A 1168 63 0.1078 0.0154 0.2857 4.5 8t7s:G
32 7z4d:E 1166 63 0.1078 0.0154 0.2857 4.6
33 7jrl:A 457 78 0.1377 0.0503 0.2949 5.1 7jrm:A
34 2il1:A 163 54 0.0838 0.0859 0.2593 7.4
35 5vlq:B 413 43 0.0659 0.0266 0.2558 8.7
36 5vlq:A 391 43 0.0659 0.0281 0.2558 8.7
37 3wb2:A 160 80 0.1557 0.1625 0.3250 8.9 5d5q:A, 5d5q:B, 5d5q:C, 5d5q:D, 3wb0:A, 3wb0:B, 3wb0:C, 3wb0:D, 3wb2:B, 3wb2:C, 3wb2:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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