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BioLiP
>protein
GSMAAHSADLKCPTPGCDGSGHITGNYASHRSLSGCPRAKKSGLRV

The query sequence (length=46) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2jyd:A 46 46 1.0000 1.0000 1.0000 2.92e-28
2 2mf8:A 75 37 0.8043 0.4933 1.0000 2.17e-21 2jx1:A
3 2mf8:A 75 33 0.6522 0.4000 0.9091 8.78e-16 2jx1:A
4 1pxe:A 48 31 0.4783 0.4583 0.7097 9.87e-12
5 2cs8:A 108 41 0.5217 0.2222 0.5854 5.38e-11
6 2cs8:A 108 26 0.3478 0.1481 0.6154 4.00e-07
7 1e1d:A 553 24 0.2174 0.0181 0.4167 3.0 1e2u:A, 1e9v:A, 1gnt:A, 1oa1:A, 1w9m:A
8 4v8p:BC 409 38 0.2391 0.0269 0.2895 3.6 4v8p:CC, 4v8p:EC, 4v8p:GC
9 8dyu:A 2562 14 0.1739 0.0031 0.5714 4.1 8dyv:A
10 8fcy:A 2864 14 0.1739 0.0028 0.5714 4.1 8fd6:A, 8fdt:A
11 8pqw:A 2892 14 0.1739 0.0028 0.5714 4.1 8pqy:A, 8pqz:A, 8pqz:J
12 5nug:A 2920 14 0.1739 0.0027 0.5714 4.1 5nug:B
13 7z8g:A 3047 14 0.1739 0.0026 0.5714 4.1 8fdu:A, 7z8l:f
14 8ptk:f 4502 14 0.1739 0.0018 0.5714 4.1 8ptk:e
15 7z8f:e 4579 14 0.1739 0.0017 0.5714 4.1 5owo:A, 8pr2:f, 8ptk:m, 8ptk:n, 7z8f:f, 7z8f:m, 7z8f:n, 7z8h:A
16 7ep0:A 250 13 0.1957 0.0360 0.6923 5.1 7ep0:B, 7yc2:C, 7yc2:A, 7yc2:B, 7yc2:D
17 2eln:A 38 11 0.1957 0.2368 0.8182 6.0 2ruz:A
18 4tx6:B 310 20 0.1957 0.0290 0.4500 7.4 4tx6:A, 2xtk:A, 2xtk:B, 2xuc:A, 2xuc:B, 2xuc:C, 2xvn:A, 2xvn:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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