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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKY
LEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKL
QFPTLRNSRLRTLINQSLN

The query sequence (length=179) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5nqv:C 190 179 1.0000 0.9421 1.0000 7.95e-129 5nqv:A, 5nqv:B, 5nqv:D
2 5c7e:C 206 179 0.9218 0.8010 0.9218 7.07e-118 5c6q:A, 5c6v:A, 5c6v:B, 5c6v:C, 5c6v:D, 5c7e:A, 5c7e:B, 5c7e:D, 5c7e:E, 5c7e:F, 5c7f:A, 5c7f:B, 5c7f:C, 5c7f:D, 5j9k:A, 5j9k:B, 5ja5:A, 5jgc:A, 5jhp:A
3 7wek:B 262 87 0.1732 0.1183 0.3563 1.01e-04 7wek:A
4 5en7:A 177 60 0.1061 0.1073 0.3167 0.011 5en6:A, 5en7:C, 5en7:E, 5en7:G
5 8hw1:A 241 54 0.1061 0.0788 0.3519 1.4 8hw1:K, 8hw1:B, 8hw1:C, 8hw1:D, 8hw1:E, 8hw1:F, 8hw1:G, 8hw1:H, 8hw1:I, 8hw1:J
6 2ve3:A 435 21 0.0559 0.0230 0.4762 6.8 2ve3:B, 2ve4:A, 2ve4:B
7 3mco:A 397 42 0.0894 0.0403 0.3810 7.9 3mcn:B, 3mco:B
8 5vo3:A 380 90 0.1453 0.0684 0.2889 9.4 3ic1:A, 3ic1:B, 3isz:A, 3isz:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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