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BioLiP
>protein
GSLKSACVVCLSSFKSCVFLECGHVCSCTECYRALPEPKKCPICRQAITRVIPLYNS

The query sequence (length=57) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6k2k:A 57 57 1.0000 1.0000 1.0000 4.85e-36 6m2c:E, 6m2c:F, 6m2c:G, 6m2c:H, 6m2d:A, 6m2d:B, 6m2d:C, 6m2d:D, 6m2d:E, 6m2d:F
2 3t6p:A 330 42 0.3509 0.0606 0.4762 5.04e-07 3d9t:A, 3d9t:B, 3d9u:A, 8dsf:A, 8dsf:B, 8dsf:C, 8dsf:D, 8dso:D, 4eb9:A, 4eb9:B, 4eb9:C, 4eb9:D, 6exw:A, 6exw:C, 6hpr:A, 4hy4:A, 4hy4:B, 4hy5:A, 4hy5:B, 4lge:A, 4lge:B, 4lgu:A, 4lgu:B, 5m6n:A, 5m6n:B, 4mti:A, 4mti:B, 3mup:A, 3mup:B, 3mup:C, 3mup:D, 4mu7:A, 4mu7:B, 3oz1:A, 3oz1:B, 3oz1:C, 3oz1:D, 1qbh:A, 7trm:A, 3uw4:A, 6w74:A, 6w7o:C, 6w7o:D, 6w8i:F, 6w8i:D, 6w8i:E
3 3eb5:A 65 54 0.3509 0.3077 0.3704 2.15e-05 3eb6:A
4 5zi6:A 55 55 0.2982 0.3091 0.3091 4.44e-04 5zi6:B, 5zi6:C, 5zi6:D, 5zi6:E, 5zi6:F, 5zi6:G, 5zi6:H
5 2ecg:A 75 43 0.2807 0.2133 0.3721 0.001 4ic2:A, 4ic2:B, 4ic3:A, 4ic3:B, 5o6t:A, 5o6t:B, 8w59:A, 8w59:B, 8w5a:A, 8w5a:B
6 7t92:C 317 60 0.3509 0.0631 0.3333 0.002
7 2ea5:A 68 48 0.2982 0.2500 0.3542 0.002
8 3zni:A 390 56 0.3333 0.0487 0.3393 0.011 4a49:A, 5axi:B, 5axi:A, 5axi:C, 9fqh:A, 9fqi:A, 9fqj:A, 9fqj:B, 8gcy:A, 2ldr:A, 3pfv:A, 3pfv:B, 8qng:A, 8qnh:A, 8qni:A, 8qtg:A, 8qth:A, 8qtj:A, 8qtk:A, 8vw4:A, 8vw4:B, 8vw5:A, 8vw5:B, 3zni:E, 3zni:I, 3zni:M
9 4auq:B 57 45 0.3333 0.3333 0.4222 0.015 4auq:E
10 7ah2:AAA 58 54 0.3509 0.3448 0.3704 0.017 7ah2:BBB
11 5ait:A 129 65 0.3860 0.1705 0.3385 0.024 5aiu:A, 4ap4:A, 3ng2:A, 3ng2:B, 4ppe:A, 4ppe:B, 2xeu:A
12 5ait:A 129 41 0.3158 0.1395 0.4390 0.11 5aiu:A, 4ap4:A, 3ng2:A, 3ng2:B, 4ppe:A, 4ppe:B, 2xeu:A
13 6sqr:A 69 54 0.3158 0.2609 0.3333 0.030 7ai0:AAA, 7ai0:DDD, 7ai1:AAA, 7ai1:DDD, 2hdp:A, 2hdp:B, 5mnj:C, 5mnj:G, 6sqo:A, 6sqo:D, 6sqp:A, 6sqp:B, 6sqp:C, 6sqp:D, 6sqr:D, 6sqr:G, 6sqr:J, 6sqs:A, 6sqs:D, 2vje:A, 2vje:C, 2vjf:A, 2vjf:C
14 5j3x:B 389 56 0.3158 0.0463 0.3214 0.039 4a4b:A, 4a4c:A, 1b47:A, 1b47:B, 1b47:C, 3bum:B, 3bun:B, 3buo:B, 3buo:D, 3buw:B, 3buw:D, 3bux:B, 3bux:D, 2cbl:A, 1fbv:A, 4gpl:B, 5hkx:A, 5hky:A, 5hkz:A, 5hl0:A, 5j3x:A, 5j3x:C, 5j3x:D, 5j3x:E, 5j3x:F, 2k4d:A, 5o76:A, 5o76:C, 3ob1:B, 3ob2:B, 3plf:B, 3plf:D, 7siy:A, 6xar:A, 6xar:B, 2y1m:A, 2y1m:B, 2y1m:C, 2y1m:D, 2y1m:E, 2y1m:F, 2y1n:A, 2y1n:C, 1yvh:A
15 7ahz:GGG 60 54 0.3158 0.3000 0.3333 0.059 7ahy:AAA, 7ahy:BBB, 7ahz:AAA, 7ahz:DDD, 7ahz:JJJ
16 4df9:C 405 18 0.1579 0.0222 0.5000 0.11 4df9:A, 4df9:B, 4df9:D, 4df9:E, 4df9:F
17 3p1v:A 406 18 0.1579 0.0222 0.5000 0.15 3p1v:B
18 2lxh:C 58 47 0.2456 0.2414 0.2979 0.17 2lxp:C
19 2ecj:A 58 46 0.2807 0.2759 0.3478 0.19
20 7bbd:B 160 43 0.2982 0.1062 0.3953 0.19 8a58:C, 8a58:D, 8c07:I, 8f1f:C, 8f1f:c, 6fga:A, 6fga:B, 6fga:C, 6fga:D, 6fga:E, 6fga:F, 6fga:G, 6fga:H, 5m93:B, 5m93:C, 7nbb:C, 5o44:E, 6s53:B, 6s53:A, 6s53:H, 6s53:G, 3zlz:B
21 7xyz:B 456 51 0.3684 0.0461 0.4118 0.22 7xv2:A, 7xyy:A, 7xyy:B, 7xyz:A, 7xyz:C, 7xyz:D, 7xz0:A, 7xz0:B, 7xz1:A, 7xz1:B, 7xz2:A, 7xz2:B, 7xz2:C, 7xz2:D
22 2yho:E 70 55 0.3333 0.2714 0.3455 0.27 2yhn:A, 2yhn:B, 2yho:A, 2yho:C, 2yho:G
23 5olm:B 132 42 0.2982 0.1288 0.4048 0.30 5jpx:A, 5olm:A
24 7mla:A 67 34 0.2281 0.1940 0.3824 0.30 5mnj:D, 5mnj:H, 2vje:B, 2vje:D, 2vjf:B, 2vjf:D
25 2ea6:A 69 33 0.2632 0.2174 0.4545 0.31
26 8f5o:B 1134 48 0.2281 0.0115 0.2708 0.42 8f5p:B
27 4lad:B 69 42 0.2456 0.2029 0.3333 0.49
28 7dco:M 176 41 0.2456 0.0795 0.3415 0.57 5gm6:a
29 4orh:H 142 43 0.2807 0.1127 0.3721 1.1 4ayc:A, 4ayc:B, 4orh:C, 4orh:G, 4orh:K, 4orh:L, 4whv:C, 4whv:D, 4whv:I, 4whv:J
30 5d0m:C 60 46 0.3158 0.3000 0.3913 1.2 5ulh:C, 5ulk:C
31 6dcr:B 600 31 0.1754 0.0167 0.3226 1.5
32 8fak:H 643 31 0.1754 0.0156 0.3226 1.5 2d7g:A, 2d7g:B, 2d7g:C, 2d7g:D, 2d7h:A, 6dcr:A, 2dwl:A, 2dwl:B, 2dwl:C, 2dwl:D, 2dwm:A, 2dwm:C, 2dwm:D, 2dwn:A, 2dwn:C
33 4v3k:C 75 53 0.2982 0.2267 0.3208 1.8 7ojx:A, 4v3k:F, 4v3l:C
34 4nl8:A 549 31 0.1754 0.0182 0.3226 1.9
35 4nl8:E 571 31 0.1754 0.0175 0.3226 1.9 4nl8:B
36 6dgd:A 704 31 0.1754 0.0142 0.3226 1.9 6dgd:B, 4nl4:H
37 6je8:A 469 12 0.1404 0.0171 0.6667 2.0 6jea:A, 6jeb:A
38 6wi7:A 206 51 0.3158 0.0874 0.3529 2.2 2ckl:A, 8grm:M, 2h0d:A, 7nd1:H, 8pp7:K, 8pp7:M, 4r8p:K, 4r8p:M, 3rpg:B, 6wi8:A, 6wi8:B
39 7jzv:A 253 48 0.2982 0.0672 0.3542 2.4 8grq:K, 1jm7:A, 7lyb:M
40 6o7i:A 741 41 0.2632 0.0202 0.3659 2.5
41 6muu:A 780 41 0.2632 0.0192 0.3659 2.5 6iqw:A, 6mur:A, 6mus:A, 6mut:A, 6o7e:A, 6o7h:A
42 1n7d:A 639 25 0.1930 0.0172 0.4400 2.6 1ajj:A, 3bps:E, 1d2j:A, 1f8z:A, 2fcw:B, 3gcw:E, 3gcx:E, 1hj7:A, 1hz8:A, 1i0u:A, 2kri:B, 2lgp:A, 3m0c:C, 3p5b:L, 3p5c:L, 1xfe:A
43 5eya:G 86 43 0.2982 0.1977 0.3953 2.6 5eya:F, 5fer:A, 5fer:D
44 2ysl:A 73 48 0.2456 0.1918 0.2917 2.8 2ysj:A
45 7r76:A 1834 29 0.1930 0.0060 0.3793 4.7 7r77:A
46 8hmf:A 533 40 0.2281 0.0244 0.3250 5.2 8hme:A
47 1x4j:A 75 47 0.2807 0.2133 0.3404 6.4
48 6sh6:A 681 19 0.1579 0.0132 0.4737 6.6 8ejm:A, 8ro2:DX, 5xdr:A
49 6w7z:B 71 46 0.2632 0.2113 0.3261 7.1 6w9a:B, 6w9a:D, 6w9d:B, 6w9d:E, 6w9d:H
50 2ma6:A 61 51 0.3158 0.2951 0.3529 8.5
51 7dvq:M 191 44 0.2456 0.0733 0.3182 8.6 8i0r:K, 8i0s:K, 8i0t:K, 5z56:M, 5z58:M
52 1ekf:A 365 20 0.1754 0.0274 0.5000 8.8 2a1h:A, 2a1h:B, 5bwr:A, 5bwr:B, 5bwt:A, 5bwt:B, 5bwu:A, 5bwu:B, 5bwv:A, 5bwv:B, 5bww:A, 5bww:B, 5bwx:A, 5bwx:B, 5cr5:A, 5cr5:B, 1ekf:B, 1ekp:A, 1ekp:B, 1ekv:A, 1ekv:B, 2hdk:A, 2hdk:B, 2hg8:A, 2hg8:B, 2hgw:A, 2hgw:B, 2hgx:A, 2hgx:B, 2hhf:A, 2hhf:B, 5hne:A, 5hne:B, 5i5s:A, 5i5s:B, 5i5t:A, 5i5t:B, 5i5u:A, 5i5u:B, 5i5v:A, 5i5v:B, 5i5w:A, 5i5w:B, 5i5x:A, 5i5x:B, 5i5y:A, 5i5y:B, 5i60:A, 5i60:B, 1kt8:A, 1kt8:B, 1kta:A, 1kta:B, 5mpr:A, 6prx:A, 6prx:B
53 5zbu:A 74 52 0.2632 0.2027 0.2885 9.1 5zbu:D, 5zc4:A, 5zc4:D
54 8bqd:x 367 27 0.1754 0.0272 0.3704 9.1 8bqx:x

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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