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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GSLELERVMSSLLDMGFSNAHINELLSVRRGASLQQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQ
KLGLGEGKLKRVLYCCPEIFTMRQQDINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPD
IVKSEYLQYSLTKIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTSVEEFQVFKKLLAREEEES
ESST

The query sequence (length=244) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7pd3:y 245 244 1.0000 0.9959 1.0000 1.52e-180 7o9k:A2, 7o9m:A2, 7odr:y, 7ods:y, 7odt:y, 7of0:G, 7of3:G, 7of5:G, 7of7:G, 7oic:y, 8pk0:y, 8qsj:y
2 8bx8:C 3947 49 0.0738 0.0046 0.3673 2.0 7k58:C, 7k5b:C, 7kek:C
3 2wkw:A 315 83 0.0738 0.0571 0.2169 2.5 2wkw:B
4 8scd:A 264 87 0.0943 0.0871 0.2644 2.7 7s2m:A, 7s2m:B, 7s2m:C
5 6k4d:A 539 63 0.0738 0.0334 0.2857 3.9 6k4c:A
6 2i9u:A 419 77 0.0984 0.0573 0.3117 5.2 2i9u:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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