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BioLiP
>protein
GSLCGRVFKVGEPTYSCRDCAVDPTCLLCMECFLGSIHRDHRYRMTTSGGGGFCDCGDTEAWKEGPYCQKHE

The query sequence (length=72) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3ny2:D 73 72 0.9861 0.9726 0.9861 2.16e-49 3ny2:A, 3ny2:B, 3ny2:C, 3ny2:E, 3ny2:F, 3ny2:G, 3ny2:H, 3ny3:A, 5tda:A, 5tdb:A, 5tdd:A, 5um3:A
2 3ny1:A 73 71 0.7361 0.7260 0.7465 9.80e-38 3ny1:B, 5tdc:A, 5tdc:C
3 7mex:A 1737 74 0.4583 0.0190 0.4459 5.16e-19 6kgi:B, 7mey:A, 3nih:A, 3nii:A, 3nij:A, 3nik:B, 3nik:D, 3nik:A, 3nik:F, 3nil:D, 3nil:A, 3nil:B, 3nil:F, 3nim:B, 3nim:F, 3nim:A, 3nim:D, 3nin:A, 3nin:B, 3nis:A, 3nis:B, 3nis:D, 3nis:F, 3nit:A
4 7wul:A 70 71 0.4444 0.4571 0.4507 1.54e-17 7wuk:A, 7wum:A, 7wun:A
5 7y70:A 77 59 0.3750 0.3506 0.4576 6.52e-13 6lhn:A, 7xwd:A, 7xwe:A, 7xwe:B, 7xwf:A, 7xwg:A, 7xwg:B, 7y6w:A, 7y6x:A, 7y6x:B, 7y6x:D, 7y6x:E, 7y6x:F, 7y6x:G, 7y6x:H, 7y6x:C, 7y6y:A, 7y6y:B, 7y6y:C, 7y6y:D, 7y6z:A
6 8bja:B 1638 47 0.1528 0.0067 0.2340 0.070
7 8ewi:A 1775 47 0.1528 0.0062 0.2340 0.080 8ewi:B, 8ewi:C, 8ewi:D
8 8bja:A 1563 47 0.1528 0.0070 0.2340 0.080
9 8p82:A 1596 47 0.1528 0.0069 0.2340 0.080 8p82:B
10 8d4x:B 1669 47 0.1528 0.0066 0.2340 0.080 8c06:A, 8c06:D
11 8e0q:A 1689 47 0.1528 0.0065 0.2340 0.080 8d4x:A, 8e0q:B
12 7mf3:D 158 36 0.1806 0.0823 0.3611 0.14 7mf3:E, 6z47:E, 6z47:F
13 8e9b:B 387 20 0.1389 0.0258 0.5000 0.79 8uxw:B, 8uxx:B, 6w17:B, 6w18:B
14 8ge0:A 188 28 0.1944 0.0745 0.5000 1.1 8gdx:A, 8ge0:B, 8ge0:C
15 7mju:A 184 26 0.1806 0.0707 0.5000 2.8 5dag:A, 5dah:B, 5dah:A
16 3isl:A 387 18 0.1111 0.0207 0.4444 4.4 3isl:B
17 6f8z:A 715 20 0.1389 0.0140 0.5000 4.6 6f8z:B, 6f8z:C, 6f90:A, 6f90:B, 6f90:C
18 4v3p:Sa 380 57 0.2639 0.0500 0.3333 7.7 4v7e:Bg
19 4c2j:D 395 16 0.0972 0.0177 0.4375 9.8 4c2j:A, 4c2j:B, 4c2j:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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