Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GSIISVSLGPGDPGLITVKALSQLREADVIYYPGTVSASGAVTSVALDILKEFDLDPSKLRGMLVPMSYAANYASMAEEV
QAGRRVAVVSVGDGGFYSTASAIIERARRDGLDCSMTPGIPAFIAAGSAAGMPLALQSDSVLVLAQIDEIGELERALVTH
STVVVMKLSTVRDELVSFLERYAKPFLYAEKVGMAGEFITMEVDALRSRAIPYFSLLVCSPHCRQSTLS

The query sequence (length=229) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2e0n:B 238 235 0.9956 0.9580 0.9702 2.17e-162 2e0n:A
2 2qbu:A 228 179 0.2576 0.2588 0.3296 2.01e-17 2qbu:B
3 1pjq:B 455 191 0.2358 0.1187 0.2827 1.91e-10 6p5x:A, 6p5x:B, 6p5z:A, 6p5z:B, 6p7c:A, 6p7c:B, 6p7d:A, 6p7d:B, 1pjs:A, 1pjs:B, 1pjt:A, 1pjt:B, 6pqz:A, 6pqz:B, 6pr0:A, 6pr0:B, 6pr1:A, 6pr1:B, 6pr2:A, 6pr2:B, 6pr3:A, 6pr3:B, 6pr4:A, 6pr4:B, 6ulu:A, 6ulu:B, 6veb:A, 6veb:B
4 2ybo:A 248 165 0.1965 0.1815 0.2727 4.16e-09 2ybq:A
5 1cbf:A 239 117 0.1528 0.1464 0.2991 1.89e-07 2cbf:A
6 1s4d:E 265 37 0.0830 0.0717 0.5135 2.28e-04 1s4d:A, 1s4d:B, 1s4d:D, 1s4d:F, 1s4d:G, 1s4d:H, 1s4d:I, 1s4d:J, 1s4d:K, 1s4d:L, 1s4d:M
7 3nut:C 242 126 0.1790 0.1694 0.3254 3.66e-04 3nut:A, 3nut:B, 3nut:D
8 7twk:B 392 128 0.1572 0.0918 0.2812 0.001 7twk:A, 7twk:C, 7twk:D, 7twl:A, 7twl:B, 7twl:C, 7twl:D, 7twm:A, 7twm:B, 7twm:C, 7twm:D
9 2zvb:A 259 167 0.2227 0.1969 0.3054 0.002 2zvc:A
10 3ndc:A 236 131 0.1528 0.1483 0.2672 0.003 3ndc:B
11 1v9a:B 228 32 0.0699 0.0702 0.5000 0.017 1v9a:A
12 6mjg:A 386 127 0.1485 0.0881 0.2677 0.032 6mjf:A, 6mjf:B, 6mjf:C, 6mjf:D, 6mjf:F
13 3nd1:B 249 146 0.1703 0.1566 0.2671 0.040 3nd1:A
14 7lte:A 262 127 0.1354 0.1183 0.2441 0.077 7lte:C, 7ltr:A, 7ltr:H, 7lts:A, 7lts:C, 8t1s:A, 8t1s:C, 8t1t:A, 8t1t:C
15 5n0s:B 404 127 0.1441 0.0817 0.2598 0.45 6gew:A, 5n0n:A, 5n0o:A, 5n0o:B, 5n0p:A, 5n0p:B, 5n0q:A, 5n0q:B, 5n0r:A, 5n0s:A, 5n0t:A, 5n0t:B, 5n0u:A, 5n0v:A, 5n0v:B, 5n0w:A, 5n0w:B, 5n0x:A, 5n0x:B, 5n4i:A, 5ouf:A, 6qzy:A, 6qzz:A, 6qzz:B, 6r00:A, 6tsc:A
16 5hw4:A 228 120 0.1354 0.1360 0.2583 0.48 5hw4:B, 5hw4:C
17 5fdn:A 914 51 0.0742 0.0186 0.3333 2.4 5fdn:B
18 8w0t:A 398 87 0.1048 0.0603 0.2759 2.8 8w0t:B, 8w0t:C, 8w0t:D, 8w0u:A, 8w0u:B, 8w0u:C, 8w0u:D, 8w0z:A, 8w0z:B, 8w0z:C, 8w0z:D, 8w0z:E, 8w0z:F, 8w0z:G, 8w0z:H
19 2dgn:A 431 146 0.1703 0.0905 0.2671 3.6 1iwe:A, 1iwe:B, 1lny:A, 1lny:B, 1lon:A, 1loo:A, 1mez:A, 1mf0:A, 1mf1:A
20 3h3j:B 314 54 0.0786 0.0573 0.3333 4.7 3d4p:A, 3d4p:B, 3h3j:A
21 6gbc:A 423 114 0.1135 0.0615 0.2281 5.3 6etd:A, 6etf:A, 6eth:A, 5g2s:A, 6gax:A, 6gb0:A, 6gb4:A, 6gb9:A, 6gbf:A, 6q32:A
22 1jju:B 337 74 0.0873 0.0593 0.2703 5.4 1pby:B
23 1us2:A 507 80 0.0873 0.0394 0.2500 7.7 1gny:A
24 3ahm:A 564 50 0.0568 0.0230 0.2600 8.6 3ahm:B, 3ahn:A, 3ahn:B, 3aho:A, 3aho:B
25 3apt:A 292 55 0.0742 0.0582 0.3091 9.5 3apy:A, 3apy:B, 3apy:C, 3apy:D, 3apy:E, 3apy:F, 3apy:G, 3apy:H, 8eac:A, 7th4:A, 7th4:B, 7th5:A, 7th5:B, 1v93:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218