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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GSHMTPKDDEFYQQWQLKYPKLILREASSVSEELHKEVQEAFLTLHKHGCLFRDLVRIQGKDLLTPVSRILIGNPGCTYK
YLNTRLFTVPWPVKGTEAEIAAACETFLKLNDYLQIETIQALEELAAKEKAQDEVDIKSRAAYNVTLLNFMDPQKMPYLK
EEPYFGMGKMAVSWHHDENLVDRSAVAVYSYSCEGRDPDIWHVGFKISWDIETPGLAIPLHQGDCYFMLDDLNATHQHCV
LAGSQPRFSSTHRVAECSTGTLDYILQRCQLALQNVCDDVDNDDVSLKSFEPAVLKQGEEIHNEVEFEWLRQFWFQGNRY
RKCTDWWCQPMAQLEALWKKMEGVTNAVLHEVKREGLPVEQRNEILTAILASLTARQNLRREWHARCQSRIARTLPADQK
PECRPYWEKDDASMPLPFDLTDIVSELRGQLLEA

The query sequence (length=434) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4ie6:A 447 442 0.9977 0.9687 0.9796 0.0 6aej:A, 6ak4:A, 6akw:A, 7ckk:A, 4cxw:A, 4cxx:A, 4cxy:A, 5dab:A, 7e8z:A, 5f8p:A, 4ie0:A, 4ie4:A, 4ie5:A, 4ie7:A, 8it9:A, 3lfm:A, 4qho:A, 4qkn:A, 7wcv:A, 4zs2:A, 4zs3:A
2 5zmd:G 403 426 0.9124 0.9826 0.9296 0.0 5zmd:A, 5zmd:C, 5zmd:E
3 6za0:A 240 173 0.0922 0.1667 0.2312 0.046 6z74:A, 6z74:B, 6z74:C, 6z74:D, 6za0:B, 6za3:A, 6za3:B, 6za7:A, 6za7:B, 6za7:C, 6za7:D, 6zab:A
4 6xki:A 378 64 0.0369 0.0423 0.2500 4.0 5zbz:A, 5zc9:A
5 4tyj:A 278 51 0.0392 0.0612 0.3333 5.2 6iuo:A, 5jkg:A, 5nud:A, 5nud:B, 6nvg:A, 6nvh:A, 6nvi:A, 6nvj:A, 6nvk:A, 5nwz:A, 5nwz:B, 4qq5:A, 4qqc:A, 4r6v:A, 4tyi:A, 7vjl:A, 7vjl:B, 8w5c:A, 8w5c:B, 5xff:A, 5xfj:A, 6yi8:A, 6yi8:B
6 5u6b:B 291 52 0.0415 0.0619 0.3462 6.7 5u6b:A, 5u6b:C, 5u6b:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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