Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GSHMSFRDNLKVYIESPESYKNVIYYDDDVVLVRDMFPKSKMHLLLMTRDPHLTHVHPLEIMMKHRSLVEKLVSYVQGDL
SGLIFDEARNCLSQQLTNEALCNYIKVGFHAGPSMNNLHLHIMTLDHVSPSLKNSAHYISFTSPFFVKIDTPTSNLPTRG
TLTSLFQEDLKCWRCGETFGRHFTKLKAHLQEEYDDWLDKSVSM

The query sequence (length=204) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3sp4:B 204 204 1.0000 1.0000 1.0000 4.73e-155 3sp4:A, 3spd:A, 3spd:B, 3spd:C, 3spd:D, 3spl:A, 3spl:B, 3spl:C, 3spl:D, 3szq:A, 4xba:A, 4xba:B, 4ykl:B
2 6cvq:A 180 205 0.2696 0.3056 0.2683 7.70e-15 6cvo:A, 6cvo:B, 6cvp:A, 6cvp:B, 6cvq:B, 6cvr:A, 6cvr:B, 6cvs:A, 6cvs:B, 6cvt:A, 6cvt:B, 4ndf:A, 4ndf:B, 4ndg:A, 4ndg:B, 4ndh:A, 4ndh:B, 4ndi:A, 4ndi:B
3 8dr0:D 344 90 0.1127 0.0669 0.2556 0.18 8dqw:D, 8dqx:D, 8dqz:D, 8dr1:D, 8dr3:D, 8dr4:D, 8dr5:D, 8dr6:D, 8dr7:D, 8fs3:D, 8fs4:D, 8fs5:D, 8fs6:D, 8fs7:D, 8fs8:D, 7sgz:D, 7sh2:D, 7st9:D, 7stb:D, 7ste:D, 1sxj:D, 7tfh:D, 7tfi:D, 7tfj:D, 7tfk:D, 7tfl:D, 7thj:D, 7thv:D, 8thb:D, 8thc:D, 8thd:D, 7ti8:D, 7tib:D, 7tic:D, 7tid:D, 7tku:D, 8tw7:2, 8tw8:2, 8twa:2, 8twb:2, 7u19:D, 7u1a:D, 7u1p:D
4 7veu:A 612 51 0.0637 0.0212 0.2549 0.76 7vev:A, 7vew:A, 7vew:B
5 4yec:B 228 52 0.0882 0.0789 0.3462 0.92
6 3oxk:A 115 101 0.0931 0.1652 0.1881 0.92 3oj7:A, 3omf:A
7 5uvm:A 115 34 0.0539 0.0957 0.3235 2.0 5uvm:B
8 7k4e:B 620 39 0.0588 0.0194 0.3077 2.4 7d2k:A, 6d7o:A, 6d7p:A, 6d7q:A, 6d7t:A, 6d7t:B, 6d7t:C, 6d7t:D, 6d7v:A, 6d7x:A, 8foa:A, 8foa:B, 8foa:D, 8foa:C, 8fob:A, 8fob:D, 8fob:B, 8fob:C, 5iwk:A, 5iwr:A, 5iwt:A, 7k4a:A, 7k4a:D, 7k4a:B, 7k4a:C, 7k4b:A, 7k4b:B, 7k4b:D, 7k4b:C, 7k4c:A, 7k4c:B, 7k4c:C, 7k4c:D, 7k4d:A, 7k4d:B, 7k4d:C, 7k4d:D, 7k4e:C, 7k4e:D, 7k4f:A, 7k4f:B, 7k4f:C, 7k4f:D, 7s88:A, 7s88:B, 7s88:C, 7s88:D, 7s89:A, 7s89:D, 7s89:B, 7s89:C, 7s8b:A, 7s8b:B, 7s8b:D, 7s8b:C, 7s8c:A, 7s8c:B, 7s8c:C, 7s8c:D, 8sp8:A, 8sp8:B, 8sp8:C, 8sp8:D, 5wo6:A, 5wo7:A, 5wo9:A
9 4ini:B 112 30 0.0392 0.0714 0.2667 2.7 4ini:A, 5km5:B, 5km8:B, 5km9:B, 6yvp:AAA, 6yvp:BBB
10 2yzq:A 224 76 0.1275 0.1161 0.3421 4.0
11 6d6j:B 113 36 0.0490 0.0885 0.2778 4.6 6d6j:A
12 3qvi:C 327 62 0.0882 0.0550 0.2903 5.6 3fns:A, 3fns:B, 3fnt:A, 3fnu:A, 3fnu:B, 3fnu:C, 3fnu:D, 3qvi:A, 3qvi:D
13 8xuq:A 885 77 0.1078 0.0249 0.2857 6.6 8xuo:A, 8xuo:G, 8xuq:E, 8xuq:F, 8xuq:G, 8xuv:A, 8xuv:B, 8xuv:C, 8xuv:D, 8xuv:E, 8xuv:F, 8xuv:G, 8xuv:H, 8xuv:I, 8xuv:J, 8xuv:K, 8xuv:L
14 3chx:C 159 41 0.0784 0.1006 0.3902 6.8 3chx:G, 3chx:K
15 6i7s:B 462 65 0.0931 0.0411 0.2923 7.6 6i7s:A
16 3r6f:A 130 56 0.0882 0.1385 0.3214 7.8
17 6os0:A 395 68 0.0931 0.0481 0.2794 8.0 6os1:A, 6os2:A, 8th3:A, 8th4:A
18 8j6z:O 86 52 0.0833 0.1977 0.3269 8.1

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218