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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GSHMRHRTLSSSPALWASIPCPRSELRLDLVLASGQSFRWKEQSPAHWSGVLADQVWTLTQTEDQLYCTVYRGDDVSRPT
LEELETLHKYFQLDVSLAQLYSHWASVDSHFQRVAQKFQGVRLLRQDPTECLFSFICSSNNNIARITGMVERLCQAFGPR
LIQLDDVTYHGFPNLHALAGPEAETHLRKLGLGYRARYVRASAKAILEEQGGPAWLQQLRVAPYEEAHKALCTLPGVGAK
VADCICLMALDKPQAVPVDVHVWQIAHRDYGWHPKTSQAKGPSPLANKELGNFFRNLWGPYAGWAQAVLFSADLR

The query sequence (length=315) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8bvx:A 316 315 0.9937 0.9905 0.9937 0.0 7ayz:AAA, 7ayz:BBB, 7ayz:CCC, 7az0:AAA, 7az0:BBB, 8bq7:A, 8cex:A, 8cey:A, 8cey:B, 8cey:C, 6g3y:A, 6g3y:B, 6g3y:C, 6g40:A, 6g40:B, 6g40:C, 7pz1:AAA, 7qel:AAA, 7qel:BBB, 7qel:CCC, 7z3y:AAA, 7z5b:A, 7z5b:B, 7z5b:C, 7z5r:A, 7z5r:B, 7z5r:C, 7zc7:A, 7zc7:B, 7zc7:C, 7zg3:A, 7zg3:B, 7zg3:C
2 2xhi:A 316 314 0.8571 0.8544 0.8599 0.0 7ayy:AAA, 7ayy:BBB, 7ayy:CCC, 7ayy:DDD, 7ayy:EEE, 1ebm:A, 1fn7:A, 1hu0:A, 2i5w:A, 3ih7:A, 3ktu:A, 1lwv:A, 1lww:A, 1lwy:A, 1m3h:A, 1m3q:A, 1n39:A, 1n3a:A, 1n3c:A, 2nob:A, 2noe:A, 2nof:A, 2noh:A, 2noi:A, 2nol:A, 2noz:A, 6rlw:AAA, 6rlw:BBB, 6rlw:CCC, 6rlw:DDD, 6rlw:EEE, 6w0m:A, 6w0r:A, 6w13:A, 1yqk:A, 1yql:A, 1yqm:A, 1yqr:A
3 4ejy:A 289 288 0.2667 0.2907 0.2917 2.67e-28 4ejy:B, 4ejz:A, 4ejz:B
4 3f10:A 292 289 0.2508 0.2705 0.2734 6.34e-27 3i0w:A, 3i0x:A
5 4uob:A 242 100 0.1111 0.1446 0.3500 0.002 8a5g:A
6 8a5c:A 237 53 0.0698 0.0928 0.4151 0.003 8a5f:A, 4unf:A
7 7yhq:A 393 59 0.0730 0.0585 0.3898 0.013
8 2abk:A 211 87 0.0730 0.1090 0.2644 0.043
9 1kea:A 217 106 0.0857 0.1244 0.2547 0.060
10 7yhp:A 374 57 0.0667 0.0561 0.3684 0.13 7yho:A
11 7rds:A 232 182 0.1460 0.1983 0.2527 0.23 7rdt:A
12 1kg5:A 225 110 0.1048 0.1467 0.3000 1.1 1kg2:A, 1kg3:A, 1kg4:A, 1kg6:A, 1kg7:A, 1kqj:A, 1mud:A, 1mun:A, 1muy:A, 1wef:A, 1weg:A, 1wei:A
13 3ogd:A 288 142 0.1175 0.1285 0.2606 1.5 3cvs:A, 3cvs:B, 3cvs:C, 3cvs:D, 3cvt:A, 3cvt:B, 3cvt:C, 3cvt:D, 3cw7:A, 3cw7:B, 3cw7:C, 3cw7:D, 3cwa:A, 3cwa:B, 3cwa:C, 3cwa:D, 3cws:A, 3cws:B, 3cws:C, 3cws:D, 3cwt:A, 3cwt:B, 3cwt:C, 3cwt:D, 3cwu:A, 3cwu:B, 3cwu:C, 3cwu:D, 3d4v:A, 3d4v:B, 3d4v:C, 3d4v:D, 1diz:B, 1diz:A, 3oh6:A, 3oh9:A, 1pvs:A, 1pvs:B
14 8wa1:B 998 39 0.0349 0.0110 0.2821 2.7
15 8wa0:B 973 39 0.0349 0.0113 0.2821 2.7 8w9z:B
16 7pg7:D 329 52 0.0603 0.0578 0.3654 2.8
17 5wgb:A 291 52 0.0571 0.0619 0.3462 3.3
18 6bpn:A 656 55 0.0571 0.0274 0.3273 4.7
19 4hse:A 369 68 0.0508 0.0434 0.2353 5.7
20 1qvr:A 803 68 0.0508 0.0199 0.2353 6.7 4fcv:A, 4fcv:B, 4fcv:C, 4fcw:A, 4fcw:C, 4fcw:F, 4fd2:A, 4fd2:B, 4fd2:D, 4lj5:A, 4lj6:A, 4lj7:A, 4lj7:B, 4lj7:C, 4lj8:A, 4lj9:A, 4lja:A, 1qvr:B, 1qvr:C
21 6vaa:B 1153 43 0.0413 0.0113 0.3023 7.2
22 1p6v:A 125 52 0.0476 0.1200 0.2885 7.5 1p6v:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218