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BioLiP
>protein
GSHMNLKVEFFNAGTQAQSNSIYPKFRLTNTGSNAINLADVKLHYYFTVDGDKAQTFWCDWSPVGSSNVTGTFVKMNPTT
TGADQYLEIAFSSAAGTLAANTSIEVQGRFAKSDWTNYNQADDYSFNSSATTYTSWDKVTAYSAEGLIWGIEP

The query sequence (length=153) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3zqw:A 153 153 1.0000 1.0000 1.0000 1.37e-112 3zu8:A, 3zuc:A
2 4jo5:A 170 158 0.5490 0.4941 0.5316 5.19e-52 4b9f:A, 4b9f:B, 1nbc:A, 1nbc:B
3 4b97:A 151 148 0.4641 0.4702 0.4797 2.15e-50
4 1g43:A 160 156 0.4641 0.4437 0.4551 2.03e-43
5 6d5b:B 154 149 0.4641 0.4610 0.4765 1.04e-42 6d5b:A, 6d5b:C, 6d5b:D, 6d5b:E, 6d5b:F, 6d5b:G, 6d5b:H, 6d5b:I, 6d5b:J, 6d5b:K, 6d5b:L
6 6sl4:A 150 150 0.3922 0.4000 0.4000 5.18e-40 6sl4:B, 6sl4:C
7 4b9p:A 166 160 0.3725 0.3434 0.3563 1.11e-33
8 4b9c:A 150 155 0.4118 0.4200 0.4065 9.93e-32
9 3zqx:A 146 150 0.3072 0.3219 0.3133 1.30e-24
10 2wo4:A 159 134 0.3203 0.3082 0.3657 3.15e-23 2wnx:A, 2wob:A, 2wob:C, 2wob:E
11 4b96:A 151 154 0.3464 0.3510 0.3442 3.20e-23
12 2xfg:B 172 50 0.1176 0.1047 0.3600 0.057
13 7zwc:c 303 93 0.1307 0.0660 0.2151 1.1 7zwd:c, 7zx7:c, 7zx8:c, 7zxe:c
14 3hqj:A 113 31 0.0980 0.1327 0.4839 1.2
15 8ity:4 365 93 0.1307 0.0548 0.2151 2.3 8iue:4, 8iuh:4
16 2f7a:B 213 21 0.0523 0.0376 0.3810 3.7
17 7x3t:V 792 65 0.1111 0.0215 0.2615 4.8 6iro:L, 6jyl:K, 6k1p:K, 7x3w:K, 2y9z:A
18 8j0s:D 469 47 0.1111 0.0362 0.3617 7.2 6foc:F, 6foc:D, 6foc:E, 8g08:F, 8g08:D, 8g09:D, 8g0a:E, 8g0a:F, 8g0c:F, 8g0d:D, 8g0d:E, 8g0e:E, 8g0e:F, 8j0s:F, 8j0t:D, 8j0t:F, 7jg5:F, 7jga:E, 8jr0:D, 8jr0:F, 7njk:D, 7njk:E, 7njk:F, 7njl:D, 7njl:E, 7njl:F, 7njm:D, 7njm:E, 7njm:F, 7njn:D, 7njn:E, 7njn:F, 7njo:D, 7njo:E, 7njo:F, 7njp:D, 7njp:E, 7njp:F, 7njq:D, 7njq:E, 7njq:F, 7njr:D, 7njr:E, 7njr:F, 7njs:D, 7njs:E, 7njs:F, 7nk7:D, 7nk7:E, 7nk7:F, 7nkh:D, 7nkh:E, 7nkh:F, 7nkj:D, 7nkj:E, 7nkj:F, 7y5a:D, 7y5a:F, 7y5b:D, 7y5b:E, 7y5b:F, 7y5c:D, 7y5c:E, 7y5c:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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