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BioLiP
>protein
GSHMMRSPYEYHHDLGMNYTLIRDELIVGSQPQKPEDIDHLKQEQNVAYILNLQQDKDIEYWGIDLDSIVRRCKELGIRH
MRRPAKDFDPLSLRSQLPKAVSSLEWAVSEGKGRVYVHSSAGLGRAPGVSIAYMYWFCDMNLNTAYDTLVSKRPCGPNKG
AIRGATYDLAKNDPWKEPFESLPENAFEDIADWERKLIQERVRALRGT

The query sequence (length=208) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4kyr:A 208 208 1.0000 1.0000 1.0000 2.02e-158
2 4pyh:A 293 191 0.4038 0.2867 0.4398 2.40e-45
3 4rkk:A 317 148 0.1971 0.1293 0.2770 3.56e-10 4rkk:C
4 8tk2:A 181 125 0.1538 0.1768 0.2560 1.99e-08 3f81:A, 3f81:B, 1j4x:A, 8tk2:B, 8tk3:A
5 5gtj:B 168 88 0.1154 0.1429 0.2727 1.60e-06 5gtj:A, 5gtj:C, 5gtj:D
6 7u4o:A 150 135 0.1827 0.2533 0.2815 5.55e-05 6mc1:A, 6mc1:B, 6mc1:C, 6mc1:D, 6mc1:E, 6mc1:F, 7u4o:F, 7u4o:B, 7u4o:D, 7u4o:C, 7u4o:E, 7u4r:A, 7u4r:B, 7u4r:C, 7u4r:D, 7u4r:E, 7u4r:F, 7umu:A, 7umu:B, 7umu:C, 7umu:D, 7umu:E, 7umu:F, 7umv:A, 7un0:A, 7un0:B, 7un0:C, 7un0:D, 7un0:E, 7un0:F, 7un4:A, 7un4:B, 7un4:C, 7un4:D, 7un4:E, 7un4:F
7 5z5a:A 148 78 0.1202 0.1689 0.3205 6.98e-04 5z5a:B, 5z5a:C
8 2j17:B 145 64 0.0865 0.1241 0.2812 0.002 2j16:B, 2j17:A
9 4woh:A 158 88 0.1154 0.1519 0.2727 0.015
10 6d67:A 514 70 0.0865 0.0350 0.2571 0.019 6apx:A
11 2hcm:A 159 85 0.1202 0.1572 0.2941 0.029
12 2i6j:A 161 135 0.1827 0.2360 0.2815 0.031 2dxp:A, 2i6m:A, 2i6o:A, 2i6p:A, 7mpc:A, 7mpd:A
13 6g84:B 368 147 0.1635 0.0924 0.2313 0.48 6g84:A, 6g85:A, 6g85:B, 6g86:A, 6g86:B, 5xw5:A
14 2q1w:A 300 72 0.0913 0.0633 0.2639 1.1 2q1w:B, 2q1w:C
15 3rgq:A 156 118 0.1346 0.1795 0.2373 1.3
16 8a9k:A 998 76 0.1010 0.0210 0.2763 1.6
17 7kzv:U 1198 76 0.1010 0.0175 0.2763 1.6 7kzt:U, 6vaa:A, 6vae:A, 6vaf:A
18 5anb:K 1120 96 0.1154 0.0214 0.2500 2.4 5anc:K
19 5m99:A 506 128 0.1394 0.0573 0.2266 4.1 5m99:B
20 8gym:t 156 16 0.0433 0.0577 0.5625 5.7 8b6h:EL, 8b6h:El, 8bqs:EL, 8bqs:El, 8gym:T
21 2f02:A 319 30 0.0577 0.0376 0.4000 7.0 2f02:B
22 5udk:A 461 53 0.0721 0.0325 0.2830 8.0 6c6k:A, 6c6k:B, 5udi:A, 5udj:A, 5udl:A, 5w5h:A, 5w5h:C
23 5w5i:C 436 53 0.0721 0.0344 0.2830 8.4 5w5i:A
24 6bhu:A 1328 25 0.0433 0.0068 0.3600 9.6 5uja:A, 6uy0:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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