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BioLiP
>protein
GSHMLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTEADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTRNYG
QRVFVTEVQAESVQFLEP

The query sequence (length=98) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6bhx:C 102 102 0.9898 0.9510 0.9510 2.32e-66 6bhx:A, 6bhx:B
2 7dep:B 102 101 0.8061 0.7745 0.7822 1.01e-50
3 8gw5:A 99 99 0.7959 0.7879 0.7879 6.87e-50 7ym1:A
4 3vdy:A 101 101 0.6122 0.5941 0.5941 1.99e-39 3vdy:B
5 3a5u:A 118 99 0.4490 0.3729 0.4444 1.65e-18 3a5u:B
6 5odn:D 106 96 0.3980 0.3679 0.4062 4.20e-18 5odn:F, 5odn:G, 5odn:B, 5odn:C, 5odn:A, 5odn:E, 5odn:H
7 5odp:G 100 102 0.3980 0.3900 0.3824 1.18e-17 5odp:A
8 2vw9:A 108 107 0.3878 0.3519 0.3551 2.78e-16 2vw9:B
9 1eqq:B 120 100 0.3878 0.3167 0.3800 9.13e-16 1eqq:A, 1eyg:A, 1eyg:B, 1eyg:C, 1eyg:D
10 3udg:C 214 95 0.3673 0.1682 0.3789 4.44e-13 3udg:B, 3udg:A
11 3udg:C 214 31 0.1837 0.0841 0.5806 8.81e-05 3udg:B, 3udg:A
12 6irq:C 104 90 0.3469 0.3269 0.3778 1.26e-12 6irq:A, 6irq:B, 6irq:D, 6jdg:C, 6jdg:A, 6jdg:B, 6jdg:D, 7vum:A, 7vum:C, 5yun:B, 5yun:A, 5yun:D
13 8uzt:B 100 99 0.3265 0.3200 0.3232 7.41e-07
14 3ulp:C 116 85 0.2653 0.2241 0.3059 3.13e-06 3ulp:A, 3ulp:B, 3ulp:D
15 6rup:A 111 105 0.3367 0.2973 0.3143 1.00e-05 6rup:B, 8uzt:A, 8uzt:C, 8uzt:D
16 8iwh:3 220 47 0.1633 0.0727 0.3404 0.41 8j0d:3, 8j5k:p, 8j5k:P, 8w4p:p
17 2ccz:A 121 42 0.1429 0.1157 0.3333 0.62 2ccz:B, 1v1q:A, 1v1q:B
18 4cab:A 507 49 0.1939 0.0375 0.3878 0.76 4cab:B, 4cab:C, 4cab:D
19 6the:A 299 46 0.1633 0.0535 0.3478 2.3
20 2j51:A 288 34 0.1429 0.0486 0.4118 2.9 8bem:A, 8bem:B, 8bem:D, 8bem:G, 6hvd:A, 2jfl:A, 4usf:A, 4usf:B, 2uv2:A
21 7dvl:B 407 34 0.1224 0.0295 0.3529 4.1 7dvl:A
22 3qyq:A 273 44 0.1735 0.0623 0.3864 4.1 3qyq:B
23 1ib1:E 179 40 0.1224 0.0670 0.3000 5.1 1cjw:A, 1ib1:F, 1ib1:G, 1ib1:H, 1kuv:A, 1kux:A, 1kuy:A, 1l0c:A
24 7tl7:A 531 67 0.2143 0.0395 0.3134 5.4 5kgl:A, 5kgl:B, 5kgm:A, 5kgm:B, 5kgn:A, 5kgn:B, 7knf:A, 7knf:B, 7kng:A, 7kng:B, 7tl7:B, 7tl7:C, 7tl7:D
25 1hfa:A 263 51 0.1633 0.0608 0.3137 6.2 1hg2:A, 1hg5:A
26 5iko:A 807 45 0.1429 0.0173 0.3111 7.0 5ikp:A
27 2ex8:A 456 44 0.1429 0.0307 0.3182 7.2 2ex6:A, 2ex9:A, 2exa:A, 2exb:A
28 5wyj:CB 1098 26 0.0918 0.0082 0.3462 8.2 7ajt:UV, 7aju:UV, 7d4i:RE, 7d5s:RE, 7d5t:RE, 7d63:RE, 6ke6:RE, 6lqp:RE, 6lqq:RE, 6lqr:RE, 6lqs:RE, 6lqt:RE, 6lqu:RE, 7suk:NH, 5wyk:CB, 6zqb:UV, 6zqc:UV, 6zqd:UV, 6zqe:UV
29 6ns2:A 634 44 0.1531 0.0237 0.3409 8.8 6ns2:C
30 6ns4:A 685 44 0.1531 0.0219 0.3409 8.9 6ns3:A, 6ns4:B, 6ns5:A, 6ns5:B, 6ns6:A, 6ns6:B
31 3bht:B 262 20 0.1020 0.0382 0.5000 9.7 3bht:D, 3bhu:B, 3bhu:D, 3bhv:B, 3bhv:D, 2c5v:B, 2c5v:D, 2cch:B, 2cch:D, 2cci:B, 2cci:D, 4cfu:D, 4cfv:B, 4cfv:D, 4eoj:B, 4eol:B, 4eom:D, 4eon:B, 4eon:D, 4eoo:B, 4eop:D, 4eoq:B, 1gy3:D, 1h24:B, 1h25:B, 1h26:B, 1h27:B, 1h28:B, 1h28:D, 2iw6:B, 2iw9:B, 2iw9:D, 5lmk:B, 1oi9:B, 1oiu:B, 1oiy:B, 1okv:B, 1okv:D, 1okw:B, 1okw:D, 1ol1:B, 1ol1:D, 1ol2:B, 1ol2:D, 6p3w:B, 6p3w:D, 3qhr:D, 3qhr:B, 3qhw:B, 3qhw:D, 1urc:B, 1urc:D, 2uue:B, 2uue:D, 2v22:B, 2v22:D, 2wev:B, 2wev:D, 2wfy:B, 2wfy:D, 2whb:B, 2whb:D, 2wma:B, 2wmb:B, 2x1n:D
32 4csf:K 251 63 0.2041 0.0797 0.3175 9.8 4csf:A, 4csf:B, 4csf:F, 4csf:C, 4csf:D, 4csf:E, 4csf:G, 4csf:H, 4csf:L, 4csf:I, 4csf:J, 4csf:M, 4csf:N, 4csf:R, 4csf:O, 4csf:P, 4csf:Q, 4csf:S, 4csf:T, 4csf:X, 4csf:U, 4csf:V, 4csf:W

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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