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BioLiP
>protein
GSHMLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTRNYE
NQQGQRVFVTEVQAESVQFLEP

The query sequence (length=102) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6bhx:C 102 102 1.0000 1.0000 1.0000 1.19e-72 6bhx:A, 6bhx:B
2 8gw5:A 99 99 0.7941 0.8182 0.8182 8.02e-55 7ym1:A
3 7dep:B 102 105 0.7941 0.7941 0.7714 1.69e-50
4 3vdy:A 101 105 0.5980 0.6040 0.5810 6.97e-39 3vdy:B
5 5odn:D 106 96 0.3824 0.3679 0.4062 1.06e-20 5odn:F, 5odn:G, 5odn:B, 5odn:C, 5odn:A, 5odn:E, 5odn:H
6 2vw9:A 108 107 0.3824 0.3611 0.3645 1.41e-19 2vw9:B
7 1eqq:B 120 100 0.3824 0.3250 0.3900 1.56e-19 1eqq:A, 1eyg:A, 1eyg:B, 1eyg:C, 1eyg:D
8 3a5u:A 118 100 0.4314 0.3729 0.4400 3.81e-19 3a5u:B
9 5odp:G 100 106 0.3725 0.3800 0.3585 3.08e-16 5odp:A
10 6irq:C 104 92 0.3431 0.3365 0.3804 2.58e-14 6irq:A, 6irq:B, 6irq:D, 6jdg:C, 6jdg:A, 6jdg:B, 6jdg:D, 7vum:A, 7vum:C, 5yun:B, 5yun:A, 5yun:D
11 3udg:C 214 79 0.2941 0.1402 0.3797 2.35e-12 3udg:B, 3udg:A
12 3udg:C 214 95 0.3431 0.1636 0.3684 3.03e-07 3udg:B, 3udg:A
13 3ulp:C 116 98 0.2843 0.2500 0.2959 7.70e-09 3ulp:A, 3ulp:B, 3ulp:D
14 6rup:A 111 105 0.3333 0.3063 0.3238 1.00e-08 6rup:B, 8uzt:A, 8uzt:C, 8uzt:D
15 8uzt:B 100 103 0.3137 0.3200 0.3107 3.46e-06
16 8iwh:3 220 47 0.1569 0.0727 0.3404 0.23 8j0d:3, 8j5k:p, 8j5k:P, 8w4p:p
17 2ccz:A 121 105 0.2157 0.1818 0.2095 0.39 2ccz:B, 1v1q:A, 1v1q:B
18 1ib1:E 179 40 0.1275 0.0726 0.3250 0.99 1cjw:A, 1ib1:F, 1ib1:G, 1ib1:H, 1kuv:A, 1kux:A, 1kuy:A, 1l0c:A
19 2ex8:A 456 42 0.1471 0.0329 0.3571 2.9 2ex6:A, 2ex9:A, 2exa:A, 2exb:A
20 5l3w:A 297 32 0.1373 0.0471 0.4375 4.2 5l3s:B, 5l3s:D, 5l3s:F, 5l3s:H
21 6the:A 299 46 0.1471 0.0502 0.3261 5.2
22 3qyq:A 273 44 0.1667 0.0623 0.3864 5.8 3qyq:B
23 5wyj:CB 1098 26 0.0882 0.0082 0.3462 7.1 7ajt:UV, 7aju:UV, 7d4i:RE, 7d5s:RE, 7d5t:RE, 7d63:RE, 6ke6:RE, 6lqp:RE, 6lqq:RE, 6lqr:RE, 6lqs:RE, 6lqt:RE, 6lqu:RE, 7suk:NH, 5wyk:CB, 6zqb:UV, 6zqc:UV, 6zqd:UV, 6zqe:UV
24 7tl7:A 531 67 0.2059 0.0395 0.3134 7.1 5kgl:A, 5kgl:B, 5kgm:A, 5kgm:B, 5kgn:A, 5kgn:B, 7knf:A, 7knf:B, 7kng:A, 7kng:B, 7tl7:B, 7tl7:C, 7tl7:D
25 4edg:A 321 44 0.1275 0.0405 0.2955 7.6 4edk:A, 4edr:A, 4edt:A, 4edv:A, 4ee1:A
26 3bht:B 262 20 0.0980 0.0382 0.5000 8.8 3bht:D, 3bhu:B, 3bhu:D, 3bhv:B, 3bhv:D, 2c5v:B, 2c5v:D, 2cch:B, 2cch:D, 2cci:B, 2cci:D, 4cfu:D, 4cfv:B, 4cfv:D, 4eoj:B, 4eol:B, 4eom:D, 4eon:B, 4eon:D, 4eoo:B, 4eop:D, 4eoq:B, 1gy3:D, 1h24:B, 1h25:B, 1h26:B, 1h27:B, 1h28:B, 1h28:D, 2iw6:B, 2iw9:B, 2iw9:D, 5lmk:B, 1oi9:B, 1oiu:B, 1oiy:B, 1okv:B, 1okv:D, 1okw:B, 1okw:D, 1ol1:B, 1ol1:D, 1ol2:B, 1ol2:D, 6p3w:B, 6p3w:D, 3qhr:D, 3qhr:B, 3qhw:B, 3qhw:D, 1urc:B, 1urc:D, 2uue:B, 2uue:D, 2v22:B, 2v22:D, 2wev:B, 2wev:D, 2wfy:B, 2wfy:D, 2whb:B, 2whb:D, 2wma:B, 2wmb:B, 2x1n:D
27 4cab:A 507 36 0.1471 0.0296 0.4167 9.0 4cab:B, 4cab:C, 4cab:D
28 5iko:A 807 45 0.1373 0.0173 0.3111 9.8 5ikp:A
29 5uzx:A 231 61 0.1471 0.0649 0.2459 9.9 5uzx:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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