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BioLiP
>protein
GSHMEVVNKGDYYSIQGKYDEIIVANKHYPLSKDYNPGENPTAKAELVKLIKAMQEAGFPISDHYSGFRSYETQTKLYQD
YVNGKEAADRYSARPGYSEHQTGLAFDVIGTDGDLVTEEKAAQWLLDHAADYGFVVRYLKGKEKETGYMAEEWHLRYVGK
EAKEIAESGLSLEEYYGFEGGDYV

The query sequence (length=184) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4oxd:A 185 185 0.9946 0.9892 0.9892 1.07e-132 4d0y:A, 4d0y:B, 4nt9:B, 4nt9:A, 4nt9:C, 4ox5:A, 4oxd:C, 4oxd:B, 4oxd:E, 4oxd:D
2 4mph:B 184 179 0.3587 0.3587 0.3687 5.17e-27 4mph:A
3 4ox3:A 214 190 0.3478 0.2991 0.3368 3.13e-23
4 4f78:A 251 177 0.3533 0.2590 0.3672 1.19e-21 4muq:A
5 6a6a:A 183 180 0.3261 0.3279 0.3333 6.61e-17 6a6a:B, 5hnm:A, 5hnm:B, 5hnm:C, 5hnm:D, 5hnm:E, 5hnm:F, 5zhf:A, 5zhf:B, 5zhw:A, 5zhw:B
6 4oak:A 190 179 0.2935 0.2842 0.3017 4.44e-16 4mur:A, 4mur:B, 4mus:A, 4mus:B, 4mut:A, 4mut:B, 4oak:B
7 7ney:A 497 74 0.1250 0.0463 0.3108 0.084 7ney:B, 7nf0:A, 7nf0:B, 7nf1:A, 7nf1:B, 7nf2:A, 7nf2:B
8 7y7q:A 951 39 0.0870 0.0168 0.4103 0.73 2j7n:A, 2j7n:B, 2j7o:A, 7y7p:A, 7y7p:B, 7y7r:A, 7y7r:B, 7y7s:A, 7y7s:B, 7y7t:A, 7y7t:B
9 4tqg:A 297 44 0.0978 0.0606 0.4091 0.78
10 7rpx:E 590 107 0.1522 0.0475 0.2617 0.79 2hix:A, 7rpo:E, 7rpw:E
11 6euf:A 472 138 0.1957 0.0763 0.2609 1.2 6euf:B, 6euf:C, 6euf:D
12 2g3f:A 414 48 0.0761 0.0338 0.2917 1.2 2bb0:A, 2bb0:B, 2g3f:B
13 6xmg:A 638 116 0.1630 0.0470 0.2586 2.5 6xmf:A
14 8any:A5 581 23 0.0707 0.0224 0.5652 3.6
15 2okl:A 185 101 0.1467 0.1459 0.2673 3.9 2okl:B
16 6wqw:A 305 28 0.0598 0.0361 0.3929 4.7
17 7c1s:A 433 36 0.0707 0.0300 0.3611 5.4 7c1l:A, 7c1r:A
18 8iew:A 498 20 0.0652 0.0241 0.6000 7.5 8inb:A
19 7e7m:C 284 62 0.0924 0.0599 0.2742 8.6 7e7m:A, 7e7m:B, 7e7m:D
20 5ysc:A 255 29 0.0652 0.0471 0.4138 9.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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