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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GSHMEQDLKTLPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRSYE

The query sequence (length=57) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1qyp:A 57 57 1.0000 1.0000 1.0000 3.97e-39
2 5fj9:I 92 44 0.3860 0.2391 0.5000 6.02e-12 5fja:I
3 7z0h:I 110 44 0.3860 0.2000 0.5000 1.29e-11 8bws:I, 6cnb:I, 6cnc:I, 6cnd:I, 6cnf:I, 6eu0:I, 6eu1:I, 6eu2:I, 6eu3:I, 6f40:I, 6f41:I, 6f42:I, 5fj8:I, 6tut:I, 7z1l:I, 7z1m:I, 7z1o:I, 7z2z:I, 7z30:I, 7z31:I
4 7d59:I 108 48 0.4035 0.2130 0.4792 5.87e-11 7a6h:I, 7ae1:I, 7ae3:I, 7aea:I, 7dn3:I, 7du2:I, 7fji:I, 7fjj:I, 8ity:I, 8iue:I, 8iuh:I
5 4c2m:I 124 54 0.3860 0.1774 0.4074 8.66e-11 4c2m:X, 4c3h:I, 4c3i:I, 4c3j:I, 6h67:I, 6h68:I, 6hko:I, 6hlr:I, 5lmx:I, 5m3f:I, 5m3m:I, 5m5x:I, 5n61:I, 5oa1:I, 6rqt:I, 6ruo:I, 6rwe:I, 6tps:I, 5w5y:I, 5w64:I, 5w65:I, 5w66:I, 4ym7:AI, 4ym7:BI, 4ym7:CI, 4ym7:DI, 4ym7:EI, 4ym7:FI
6 6hlq:I 111 47 0.3509 0.1802 0.4255 1.46e-10 5g5l:I, 6hls:I
7 5fmf:2 174 42 0.2982 0.0977 0.4048 4.44e-07 3po3:S, 1y1v:S
8 5iy6:U 170 42 0.2982 0.1000 0.4048 2.90e-06 5iy7:U, 5iy8:U, 5iya:U, 5iyb:U, 5iyc:U, 6o9l:U, 1tfi:A
9 3h0g:I 111 44 0.2632 0.1351 0.3409 5.73e-06 3h0g:U
10 7oba:I 105 38 0.2632 0.1429 0.3947 7.19e-06 7ob9:I, 7obb:I
11 5x4z:I 113 46 0.2807 0.1416 0.3478 2.15e-05 6a5l:I, 6a5o:I, 6a5p:I, 6a5r:I, 6a5t:I, 6a5u:I, 8h0v:I, 8h0w:I, 8he5:I, 6inq:I, 6ir9:I, 6j4w:I, 6j4x:I, 6j4y:I, 6j4z:I, 6j50:I, 6j51:I, 8jh2:I, 8jh3:I, 8jh4:I, 7wbv:I, 7wbw:I, 7wbx:I, 5x4z:U, 5x50:I, 5x51:I, 5x51:U, 7xn7:I, 5xog:I, 5xon:I, 7xse:I, 7xsx:I, 7xsz:I, 7xt7:I, 7xtd:I, 7xti:I, 8yfq:I, 8yfr:I
12 1i3q:I 122 46 0.2632 0.1230 0.3261 2.64e-05 4a3b:I, 4a3c:I, 4a3d:I, 4a3e:I, 4a3f:I, 4a3g:I, 4a3i:I, 4a3j:I, 4a3k:I, 4a3l:I, 4a3m:I, 4a93:I, 2b8k:I, 4bbr:I, 4bbs:I, 6blo:I, 6blp:I, 6bm2:I, 6bm4:I, 6bqf:I, 4bxx:I, 4bxz:I, 4by1:I, 4by7:I, 5c3e:I, 5c4a:I, 5c4j:I, 5c4x:I, 8cen:I, 8ceo:I, 3cqz:I, 2e2h:I, 2e2i:I, 2e2j:I, 3fki:I, 5fmf:I, 5fyw:I, 5fz5:I, 3gtg:I, 3gtj:I, 3gtk:I, 3gtl:I, 3gtm:I, 3gto:I, 3gtp:I, 3gtq:I, 6gyk:I, 6gyl:I, 6gym:I, 3h3v:J, 3hou:I, 3hou:U, 3hov:I, 3how:I, 3hox:I, 3hoy:I, 3hoz:I, 3i4m:I, 3i4n:I, 1i50:I, 1i6h:I, 6i84:I, 5ip7:I, 5ip9:I, 3j0k:I, 2ja5:I, 2ja6:I, 2ja7:I, 2ja7:U, 2ja8:I, 8jch:I, 3k1f:I, 8k5p:I, 3k7a:I, 1k83:I, 7ked:I, 7kee:I, 7kef:I, 3m3y:I, 3m4o:I, 7mei:i, 7mei:I, 7mk9:I, 7mka:i, 7ml0:I, 7ml1:I, 7ml2:I, 7ml4:I, 1nik:I, 7nkx:I, 7nky:I, 2nvq:I, 2nvt:I, 2nvx:I, 2nvy:I, 2nvz:I, 7o4i:I, 7o4j:I, 6o6c:G, 7o72:I, 7o73:I, 7o75:I, 5oqj:I, 5oqm:I, 5ot2:I, 3po2:I, 3po3:I, 1r5u:I, 1r9s:I, 1r9t:I, 2r92:I, 7rim:I, 7rip:I, 7riq:I, 7riw:I, 7rix:I, 7riy:I, 3rzd:I, 3rzo:I, 3s14:I, 3s15:I, 3s16:I, 3s17:I, 3s1m:I, 3s1n:I, 3s1q:I, 3s1r:I, 3s2d:I, 3s2h:I, 1sfo:I, 5sva:I, 8tug:I, 8tvp:I, 8tvq:I, 8tvs:I, 8tvv:I, 8tvw:I, 8tvx:I, 8tvy:I, 1twa:I, 1twc:I, 1twf:I, 1twg:I, 1twh:I, 5u5q:I, 8u9r:I, 8u9x:I, 8ukq:I, 8ukr:I, 8uks:I, 8ukt:I, 8uku:I, 6upx:I, 6upy:I, 6upz:I, 6uq0:I, 6uq1:I, 6uq2:I, 6uq3:I, 4v1m:I, 4v1n:I, 4v1o:I, 2vum:I, 5vvr:I, 5vvs:I, 5w4u:I, 5w51:I, 1wcm:I, 4x67:I, 4x6a:I, 1y1v:I, 1y1w:I, 4y52:I, 1y77:I, 4y7n:I, 2yu9:I, 7zs9:I, 7zsa:I, 7zsb:I
13 5xon:U 155 42 0.2632 0.0968 0.3571 8.44e-05
14 8hil:I 99 48 0.3509 0.2020 0.4167 8.64e-05 8him:I, 8hyj:I
15 5n5y:I 99 47 0.2807 0.1616 0.3404 0.001 5n5z:I, 5n60:I
16 5iy6:I 125 47 0.2807 0.1280 0.3404 0.006 8a3y:I, 8a40:I, 7b0y:I, 8b3d:I, 8b3f:I, 7b7u:I, 8bvw:I, 8byq:I, 8bz1:I, 6drd:I, 7edx:w, 7eg7:w, 7eg8:w, 7eg9:w, 7ega:w, 7egb:w, 7egc:w, 7ena:PI, 7enc:PI, 6exv:I, 7f4g:I, 5flm:I, 6gmh:I, 6gml:I, 8gxq:PI, 8gxs:PI, 5iy7:I, 5iy8:I, 5iy9:I, 5iya:I, 5iyb:I, 5iyc:I, 5iyd:I, 7lbm:I, 7nvr:I, 7nvs:I, 7nvt:I, 7nvu:I, 7nvy:I, 7nvz:I, 7nw0:I, 8oeu:I, 8oev:I, 8oew:I, 8of0:I, 5oik:I, 7okx:I, 7oky:I, 7ol0:I, 7oo3:I, 7oob:I, 7oop:I, 7opc:I, 7opd:I, 7ozn:I, 7ozn:U, 7ozo:I, 7ozo:U, 7ozp:I, 7ozp:U, 8p4a:I, 8p4b:I, 8p4e:I, 8p4f:I, 7pks:I, 8rbx:I, 8s51:I, 8s52:I, 8s54:I, 8s55:I, 8s5n:I, 6ted:I, 8uha:I, 8uhd:I, 8uhg:I, 8ui0:I, 8uis:I, 7unc:I, 7und:I, 8w8e:I, 8w8f:I, 8wak:w, 8wal:w, 8wan:w, 8wao:w, 8wap:w, 8waq:w, 8war:w, 8was:w, 8wat:w, 8wau:w, 8wav:w, 8waw:w, 8wax:w, 8way:w, 8waz:w, 8wb0:w, 6xre:I, 7ycx:7, 7zwd:I, 7zx7:I, 7zx8:I
17 4c7x:A 662 35 0.1754 0.0151 0.2857 0.17
18 7lyt:A 712 39 0.2632 0.0211 0.3846 0.37 7lys:A, 7m5o:A
19 8cip:A 665 35 0.1579 0.0135 0.2571 0.52 8cip:B, 8cip:C, 8cip:D
20 8duj:J 3892 24 0.1579 0.0023 0.3750 0.54
21 8r3s:A 663 35 0.1579 0.0136 0.2571 1.2 8r3s:B, 8r3s:C, 8r3s:D, 8r3s:E, 8r3s:F, 8r3s:G, 8r3s:H, 8r3s:I, 8r3s:J
22 8cro:N 65 34 0.1579 0.1385 0.2647 1.5 8oki:N, 8orq:N, 8p2i:N, 8rbo:N
23 1mey:F 84 40 0.2281 0.1548 0.3250 1.5 1mey:C
24 1mey:F 84 40 0.2281 0.1548 0.3250 2.6 1mey:C
25 8hov:A 87 44 0.2105 0.1379 0.2727 2.3 8hov:C, 8hov:B, 8hov:D, 8hov:E, 8hov:F
26 9bct:N 65 34 0.1579 0.1385 0.2647 2.9 9bcu:N, 6kf4:N, 4qiw:N, 4qiw:V
27 8hr5:A 466 38 0.2281 0.0279 0.3421 3.2
28 2nb9:A 49 42 0.1754 0.2041 0.2381 3.2
29 6skg:Bo 43 19 0.1228 0.1628 0.3684 3.6
30 3go1:L 209 38 0.2807 0.0766 0.4211 3.7
31 3m49:A 665 35 0.1228 0.0105 0.2000 3.7 3hyl:A, 3hyl:B, 3m49:B
32 2aqc:A 63 32 0.2632 0.2381 0.4688 3.7 2apo:B
33 8slg:B 447 20 0.1228 0.0157 0.3500 4.0 8slf:B, 8u2q:B
34 5ijl:A 943 14 0.1404 0.0085 0.5714 4.2
35 8ppt:B 1191 14 0.1404 0.0067 0.5714 4.2 8ppu:B, 8ppv:B, 6t8h:B
36 6knb:B 1120 9 0.1228 0.0063 0.7778 4.8 6knc:B
37 2aax:A 261 41 0.2281 0.0498 0.3171 5.1 2a3i:A, 2aa2:A, 2aa5:A, 2aa5:B, 2aa6:A, 2aa6:B, 2aa7:A, 2aax:B, 2ab2:A, 2ab2:B, 2abi:A, 2abi:B, 2abi:C, 6gev:A, 6gg8:A, 6ggg:A, 5hcv:A, 5hcv:B, 5hcv:C, 5l7e:A, 5l7g:A, 5l7h:A, 5mwp:A, 5mwy:A, 2oax:A, 2oax:B, 2oax:C, 2oax:D, 2oax:E, 2oax:F, 4pf3:A, 4uda:A, 4udb:A, 3vhu:A, 3vhv:A, 3wff:A, 3wfg:A, 1y9r:A, 1y9r:B, 1ya3:A, 1ya3:B, 1ya3:C
38 6htj:A 119 24 0.1579 0.0756 0.3750 5.3 6htj:B
39 7ae4:a 67 42 0.2456 0.2090 0.3333 5.6 7ae4:b, 7ae4:c, 7ae4:d, 7ae4:e, 7ae4:f, 7ae5:b, 7ae5:c, 7ae5:d, 7ae5:e, 7ae5:f, 7ae5:a, 7ae7:a, 7ae7:c, 7ae7:d, 7ae7:e, 7ae7:f
40 6x33:B 3816 21 0.1404 0.0021 0.3810 5.9 8drp:A, 8drp:B, 8drp:C, 8drp:D, 6x33:E, 6x33:H, 6x33:K
41 6x32:B 3798 21 0.1404 0.0021 0.3810 6.0 6x32:E, 6x32:H, 6x32:K
42 8duj:A 3823 21 0.1404 0.0021 0.3810 6.0
43 6x35:B 3801 21 0.1404 0.0021 0.3810 6.1 6x35:E, 6x35:H, 6x35:K
44 8dve:G 3944 21 0.1404 0.0020 0.3810 6.1 8dtb:A, 8dve:D, 8dve:A, 8dve:J
45 6w1n:B 3719 21 0.1404 0.0022 0.3810 6.1 6w1n:D, 6w1n:F, 6w1n:H, 6x34:B, 6x34:D, 6x34:F, 6x34:H
46 8duj:G 3933 21 0.1404 0.0020 0.3810 6.2
47 3rim:A 694 34 0.1930 0.0159 0.3235 6.3 3rim:C, 3rim:B, 3rim:D
48 8r3p:A 672 35 0.1404 0.0119 0.2286 6.3 8r3p:B, 8r3p:C, 8r3p:D
49 7cf9:A 3949 21 0.1404 0.0020 0.3810 6.3 7cf9:C, 7cf9:E, 7cf9:G, 8dtb:G, 8dtb:D, 6m2w:A, 6m2w:D, 6m2w:G, 6m2w:J
50 8vk4:D 4379 21 0.1404 0.0018 0.3810 6.4 8vjj:A, 8vjj:D, 8vjj:B, 8vjj:C, 8vjk:A, 8vjk:B, 8vjk:C, 8vjk:D, 8vk3:A, 8vk3:D, 8vk3:B, 8vk3:C, 8vk4:A, 8vk4:B, 8vk4:C
51 7m6a:A 4306 21 0.1404 0.0019 0.3810 6.4 7m6a:G, 7m6a:B, 7m6a:I, 7m6l:A, 7m6l:G, 7m6l:B, 7m6l:I
52 7tzc:A 4404 21 0.1404 0.0018 0.3810 6.4 3rqr:A, 8sen:A, 8sen:B, 8sen:C, 8sen:D, 8seo:A, 8seo:B, 8seo:C, 8seo:D, 8sep:A, 8sep:B, 8sep:C, 8sep:D, 8seq:A, 8seq:B, 8seq:C, 8seq:D, 8ser:A, 8ser:B, 8ser:C, 8ser:D, 8ses:A, 8ses:B, 8ses:C, 8ses:D, 8set:A, 8set:B, 8set:C, 8set:D, 7tzc:B, 7tzc:G, 7tzc:I
53 7t65:A 4252 21 0.1404 0.0019 0.3810 6.5 7t64:A, 7t64:B, 7t64:C, 7t64:D, 7t65:B, 7t65:C, 7t65:D
54 1iml:A 76 38 0.2632 0.1974 0.3947 7.6
55 4glr:K 207 32 0.2105 0.0580 0.3750 8.2
56 9bct:P 48 27 0.1754 0.2083 0.3704 9.2 9bcu:P, 4qiw:P, 4qiw:W

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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