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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GSHMEKSPQRIMHIDLDYVYDENLQQMDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKEVWFPNRLLPMKADIFSRV
AWQLRTRSGVNIYAWMPVLSWDLDPTLTRVKYLPTGEKKAQIHPEQYHRLSPFDDRVRAQVGMLYEDLAGHAAFDGILFH
DDALLSDYEDASAPAITAYQQAGFSGSLSEIRQNPEQFKQWARFKSRALTDFTLELSARVKAIRGPHIKTARNIFALPVI
QPESEAWFAQNYADFLKSYDWTAIMAMPYLEGVAEKSADQWLIQLTNQIKNIPQAKDKSILELQAQNWQKNGQHQAISSQ
QLAHWMSLLQLNGVKNYGYYPDNFLHNQPEIDLIRPEFSTAWYP

The query sequence (length=364) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4f9j:A 599 340 0.9203 0.5593 0.9853 0.0 4f9d:A, 4f9d:B, 4f9j:B, 4p7n:A, 4p7q:A, 4p7r:A, 3vus:A, 3vus:B
2 7lsd:B 152 28 0.0357 0.0855 0.4643 3.8 7lsd:A, 7lsd:C, 7lsd:D
3 4oqd:C 241 109 0.0742 0.1120 0.2477 4.0 6m81:A, 6m81:B, 6m81:C, 6m81:D, 6m82:A, 6m83:A, 4oqd:A, 4oqd:B, 4oqd:D, 4oqe:A, 4oqe:B, 3pfg:A, 3pfh:A, 3pfh:D, 3px2:A, 3px2:D, 3px3:A, 3px3:D
4 1d8h:A 288 110 0.0659 0.0833 0.2182 4.0 1d8h:B, 1d8h:C, 1d8i:A, 1d8i:B, 1d8i:C
5 6jut:A 297 73 0.0549 0.0673 0.2740 4.4 5hes:A, 5hes:B, 6juu:A, 5x5o:A, 7yaw:D, 7yaw:A, 7yaw:B, 7yaw:C, 7yaz:A
6 6bz0:A 469 138 0.0852 0.0661 0.2246 5.1 6bz0:B, 6bz0:C, 6bz0:D
7 6b11:A 385 40 0.0385 0.0364 0.3500 6.6 6b11:B
8 4ztx:A 768 24 0.0302 0.0143 0.4583 8.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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