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BioLiP
>protein
GSHMEKLHQCYWKSGEPQSDDIEASRMKRAAAKHLIERYYHQLTEGCGNEACTNEFCASCPTFLRMDNNAAAIKALELYK
INAKLCDPHP

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8ept:A 90 90 1.0000 1.0000 1.0000 1.63e-65 8enp:A, 2kr1:A, 6u19:B
2 4wai:A 91 31 0.1222 0.1209 0.3548 1.2 4wai:C, 4wai:B, 4wai:D
3 1uf2:A 967 65 0.1778 0.0165 0.2462 1.5
4 8id1:A 780 61 0.1889 0.0218 0.2787 2.1
5 5fi3:A 344 31 0.1444 0.0378 0.4194 4.0 5fi3:B, 5fi5:A, 5fi5:B
6 7s01:c 484 38 0.1333 0.0248 0.3158 5.1
7 8p5d:SR0 119 16 0.0889 0.0672 0.5000 5.4 8p60:SR0, 8p60:RR0, 7qca:SR0
8 3r3z:A 304 27 0.1444 0.0428 0.4815 5.5 6gxd:A, 6gxt:A, 5k3b:A, 5k3e:A, 6qhp:A, 6qhp:B, 6qhq:A, 6qhs:A, 6qht:A, 6qhu:A, 6qhv:A, 6qhw:A, 6qhw:B, 6qhx:A, 6qhx:B, 6qhy:A, 6qhz:A, 6qi0:A, 6qi0:B, 6qi1:A, 6qi2:A, 6qi3:A, 6qkt:A, 6qku:A, 6qkw:B, 3r3v:A, 3r3w:A, 3r3x:A, 3r3z:B, 3r3z:C, 3r3z:D, 5swn:A, 5t4t:B, 5t4t:A
9 3nu7:B 359 37 0.1333 0.0334 0.3243 6.7 3nu7:A, 3nub:A, 3nub:B, 3nys:A, 3nyt:A
10 2dc3:A 172 31 0.1111 0.0581 0.3226 9.1 3ag0:A, 4b3w:A, 4b3w:B, 2dc3:B, 1umo:A, 1umo:B, 1urv:A, 1urv:B, 1ury:A, 1ury:B, 1ut0:A, 1ut0:B, 1ux9:A, 1ux9:B, 1v5h:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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