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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GSHMDGLLNPRESSKFIAENSRDVFIDSGGVRRVAELLLAKAAGPELRVEGWKALHELNPRAADEAAVNWVFVTDTLNFS
FWSEQDEHKCVVRYRGKTYSGYWSLCAAVNRALDEGIPITSASYYATVTLDQVRNILRSDTDVSMPLVEERHRILNETGK
ILLEKFGGSFLNCVRESENSAQKLMHLVVESFPSYRDVTLFEGKRVSFYKRAQILVADTWSVLEGKGDGCFKDISSITMF
ADYRLPQVLAHLGALKYSDDLLKKLLKGEMLSYGDRQEVEIRGCSLWCVELIRDCLLELIEQKGEKPNGEINSILLDYYL
WDYAHDHREDMKGIPFHRIRCIYY

The query sequence (length=344) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8dl3:B 344 344 1.0000 1.0000 1.0000 0.0 8dl3:A
2 7u5a:A 323 332 0.3605 0.3839 0.3735 2.19e-74 7u1o:A, 7u1o:B, 7u5a:B, 7u91:A, 7u91:B, 7ulc:A, 7ulc:B
3 3wbz:E 268 142 0.0901 0.1157 0.2183 0.42 3wbz:A, 3wbz:B, 3wbz:C, 3wbz:D, 3wbz:F, 3wbz:G, 3wbz:H, 3wc0:A, 3wc0:B, 3wc0:C, 3wc0:D, 3wc0:E, 3wc0:F, 3wc0:G, 3wc0:H, 3wc0:I, 3wc0:J, 3wc0:K, 3wc0:L, 3wc0:M, 3wc0:N, 3wc0:O, 3wc0:P, 3wc1:A, 3wc1:B, 3wc1:C, 3wc1:D, 3wc2:A, 3wc2:B, 3wc2:C, 3wc2:D
4 3nc6:B 389 39 0.0407 0.0360 0.3590 1.1 3nc3:A, 3nc3:B, 3nc5:A, 3nc5:B, 3nc6:A, 3nc7:A, 3nc7:B
5 1d8c:A 709 105 0.0872 0.0423 0.2857 1.6 1p7t:A, 1p7t:B
6 5csd:D 159 52 0.0436 0.0943 0.2885 1.8 5csd:A, 5csd:B, 5csd:C, 5fb7:A, 5fb7:B, 5fb7:C, 5fb7:D, 3l1n:A
7 7qen:A 465 74 0.0610 0.0452 0.2838 2.3
8 1vcl:A 432 39 0.0407 0.0324 0.3590 3.5 1vcl:B, 3w9t:A, 3w9t:C, 3w9t:G, 3w9t:B, 3w9t:F, 3w9t:E, 3w9t:D, 2z48:A, 2z48:B, 2z49:A, 2z49:B
9 4v8p:AH 107 77 0.0523 0.1682 0.2338 4.5 4v8p:DH, 4v8p:FH, 4v8p:HH
10 5yvm:A 403 85 0.0669 0.0571 0.2706 4.9 5yvr:A, 5yvs:A
11 6i9a:A 453 102 0.0640 0.0486 0.2157 5.0 6i9a:B, 4rbm:A, 4tkx:L
12 5olt:A 383 51 0.0494 0.0444 0.3333 7.3 5ojh:A
13 4gzk:A 650 34 0.0378 0.0200 0.3824 8.3 4ieg:A, 4ieg:B, 4ieg:C, 4ieg:D
14 8bbi:A 335 31 0.0436 0.0448 0.4839 9.7 8bbi:B, 7nl2:A, 7nl2:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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