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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GSHLEPTQLGGLVTDQLARLCDVARLDRTDTETYVQTLATSLGTAAERSLALPPTTATLLSDDHTPVEYSLAFLPGATPA
LRVLVEPGWDSGDLAENGRAGLRAIRAMADRWNFSTDQLDLLEDLFFPVAPAGPFALWCALELRPGGVPGVKVYLNPAAR
GRDRRAETLREALDRLGHRQAFAALPPADDYPFLALDLGEWAAPRVKVYCTHESLSAQEAGEYSRLGRDQTTDFFHAVAG
TPSTRRALTCHSFTDTVTGRPSGFTLHMPVRSYVEHDGRARDRAADVLRRYGMDNDALDRALAAVTPRPLDDGVGLVAYV
ALVHQLGRDPRVTVYVSSEAYAVQPP

The query sequence (length=346) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7w8w:A 346 346 0.9971 0.9971 0.9971 0.0 7w8v:A, 7w8x:A, 7w8y:A
2 5inj:A 355 348 0.6850 0.6676 0.6810 7.90e-160 5k9m:A
3 6zrz:AAA 357 350 0.5925 0.5742 0.5857 2.59e-128 6zrz:BBB
4 6zrx:CCC 360 350 0.4306 0.4139 0.4257 5.05e-63 6zrx:AAA, 6zrx:BBB, 6zrx:DDD, 6zry:AAA, 6zry:BBB
5 6os6:A 362 301 0.2630 0.2514 0.3023 1.05e-20 6os5:A, 6os5:B, 6os5:C
6 4yla:A 374 305 0.2832 0.2620 0.3213 3.58e-20
7 4yzl:A 361 311 0.2659 0.2548 0.2958 1.49e-14
8 8day:A 398 334 0.2399 0.2085 0.2485 1.25e-04 8daz:A, 8daz:C, 8db0:A, 8db0:B, 8db0:C, 8db0:D, 8db1:A
9 3fig:B 577 70 0.0578 0.0347 0.2857 0.67 3fig:A, 3hps:A, 3hps:B, 3hpz:A, 3hpz:B, 3hq1:A, 3hq1:B, 1sr9:A, 1sr9:B, 3u6w:A, 3u6w:B
10 7pvi:AAA 199 95 0.0723 0.1256 0.2632 0.90 7pvi:BBB, 7pwb:AAA, 7pwb:BBB
11 3vog:A 362 42 0.0405 0.0387 0.3333 4.8 3voh:A, 3voi:A
12 5vyj:A 918 89 0.0751 0.0283 0.2921 5.0 1jqo:A, 1jqo:B, 6mgi:A, 6mgi:B, 5vyj:B, 5vyj:C, 5vyj:D
13 6yjs:BBB 486 46 0.0405 0.0288 0.3043 7.5 6yjs:AAA
14 6vya:C 387 209 0.1358 0.1214 0.2249 7.9 6vya:A, 6vya:V, 6vya:E, 6vya:G, 6vya:B, 6vya:D, 6vya:F, 6vya:H, 6vya:I, 6vya:J, 6vya:K, 6vya:L, 6vya:M, 6vya:N, 6vya:O, 6vya:P, 6vya:Q, 6vya:R, 6vya:S, 6vya:T, 6vya:U, 6vya:W, 6vya:X
15 6yjt:AAA 513 46 0.0405 0.0273 0.3043 8.0 8ce3:A, 6yjt:BBB, 6yju:AAA, 6yju:BBB, 6yjv:AAA, 6yjv:BBB, 5zic:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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