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BioLiP
>protein
GSGPYTKSHGPSHSHRYVRDSQPVAHGTVTHETQAASKHSNSPVLESNIFISDITDDSGTHRWVSGHITEVHDPLRSVSV
LEPGGPGGCAHNHRELVEVTAKTRKCLVAQNGGYFDTHTGQCLGNIISDGKLVRNSGGIQNAQFGIRKDGTLVFGYLSED
DILDQENPFVQLISGVVWLLRKGEIYINESIQAESDKTGNFRHFVDVISARTAVGHDKEGKLILFHVDGQTDVRGMNLWQ
VAKFLKDQNVMNAINLDGGGSATYVLNGSLASYPSDHCNPSKWRCPRAISTVLCIHER

The query sequence (length=298) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6pkg:A 307 298 0.9832 0.9544 0.9832 0.0 6pkg:B, 6pki:A, 6pki:B, 6pki:C, 6pki:D
2 6pku:B 264 239 0.5302 0.5985 0.6611 1.15e-121 6pku:A, 6pku:C, 6pku:D
3 4unc:D 192 183 0.1376 0.2135 0.2240 1.1 5a0w:A, 5a0w:G, 5a0w:D, 5ak9:A, 5ak9:E, 5ak9:J, 5akf:A, 5akf:E, 5akf:I, 5akm:A, 5akm:K, 5akm:F, 5akn:A, 5akn:F, 5akn:K, 4d6n:A, 4d6n:K, 4d6n:F, 4d6o:A, 4d6o:G, 4d6o:D, 5o6g:A, 5o6g:G, 5o6g:D, 5o6i:A, 5o6i:F, 5o6i:K, 4un7:A, 4un7:G, 4un7:D, 4un8:A, 4un8:G, 4un8:D, 4un9:A, 4un9:G, 4un9:D, 4una:A, 4una:G, 4una:D, 4unb:A, 4unb:D, 4unb:G, 4unc:A, 4unc:G, 4ut0:A, 4ut0:K, 4ut0:F, 2vs7:A, 2vs7:G, 2vs7:D, 2vs8:A, 2vs8:K, 2vs8:F
4 4e0s:B 898 62 0.0638 0.0212 0.3065 2.6 7nyc:B, 7nyd:B
5 3t5o:A 871 62 0.0638 0.0218 0.3065 2.6
6 7bvd:A 499 95 0.0940 0.0561 0.2947 2.9
7 6c72:A 579 57 0.0638 0.0328 0.3333 5.1 6c72:B, 6c72:C
8 5nq2:A 277 67 0.0503 0.0542 0.2239 6.6 6a6h:A, 7em9:A, 7ema:A, 7emb:A, 7emc:A, 7emc:D, 7emc:G, 7emd:A, 5h94:A, 5h94:D
9 5cwa:A 505 95 0.0940 0.0554 0.2947 6.9
10 7o4l:A 227 39 0.0503 0.0661 0.3846 7.3
11 6s6b:D 285 100 0.0738 0.0772 0.2200 8.3 6s6b:E, 6s6b:F, 6s6b:G, 6s8b:D, 6s8b:E, 6s8b:F, 6s8b:G, 6s8e:D, 6s8e:E, 6s8e:F, 6s8e:G, 6s91:D, 6s91:E, 6s91:F, 6s91:G, 6sh8:D, 6sh8:E, 6sh8:F, 6sh8:G, 6shb:D, 6shb:E, 6shb:F, 6shb:G, 6sic:D, 6sic:E, 6sic:F, 6sic:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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