Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GSGMRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIK

The query sequence (length=76) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3ew0:A 77 74 0.9737 0.9610 1.0000 6.29e-53 6de9:A, 3ew0:B, 4ezf:A, 4ezf:B, 4f1e:A, 4f1e:B, 4f1e:C, 4f1e:D, 4f1e:E, 4f1e:F, 4f1e:G, 4f1e:H, 4f1e:I, 4f1e:J, 4f1e:K, 4f1e:L, 4f1e:M, 4f1e:N, 4f1e:O, 4f1e:P, 4f1e:Q, 4f1e:R, 4f28:A, 4f28:B, 4f2c:A, 4f2c:B, 3lpq:A, 3lpq:B, 7p0o:A, 7p0o:B, 2qd0:A, 2qd0:B, 2qh7:A, 2qh7:B, 2r13:A, 3ree:A
2 3fnv:B 68 63 0.5658 0.6324 0.6825 1.13e-28 3fnv:A, 4oo7:A, 4oo7:B, 4ooa:A, 4ooa:B, 4ooa:C, 4ooa:D, 4ooa:E, 4ooa:F, 7p0p:A, 7p0p:B, 7p0p:C, 7p0p:D
3 7yvz:A 63 62 0.5000 0.6032 0.6129 8.33e-26
4 3s2r:B 78 61 0.3947 0.3846 0.4918 1.03e-16 3s2q:A, 3s2q:B, 3s2r:A
5 3tbn:A 87 17 0.1447 0.1264 0.6471 0.052
6 3tbn:A 87 26 0.1447 0.1264 0.4231 1.2
7 3tbm:A 61 22 0.1447 0.1803 0.5000 0.12 3tbm:B
8 6z1p:AV 129 55 0.2632 0.1550 0.3636 0.20
9 6avj:A 92 16 0.1447 0.1196 0.6875 0.32 6avj:B, 6avj:C
10 3tbo:A 54 22 0.1579 0.2222 0.5455 0.53
11 7ase:f 1523 41 0.1711 0.0085 0.3171 0.99 7ask:F
12 4g1e:A 964 87 0.3553 0.0280 0.3103 1.8 5ffg:A, 5ffo:A, 5ffo:E, 4g1m:A, 3ije:A, 1jv2:A, 1l5g:A, 1m1x:A, 6mk0:A, 4mmx:A, 4mmy:A, 4mmz:A, 6msl:A, 6msu:A, 6naj:A, 5nem:A, 5ner:A, 5net:A, 4o02:A, 6om1:A, 6om1:C, 6om1:E, 6om1:G, 6om2:A, 6om2:C, 8tcf:A, 8tcg:A, 1u8c:A, 6uja:A, 6ujb:A, 6ujc:A, 4um8:C, 4um8:A, 4um9:A, 4um9:C, 8vs6:A, 8vsd:A, 7y1t:A
13 5tbd:G 112 33 0.1711 0.1161 0.3939 2.2 5tbd:F, 5tbd:B, 5tbd:K
14 2xn2:A 729 60 0.2105 0.0219 0.2667 3.5
15 8any:e 238 55 0.2105 0.0672 0.2909 4.5 3j7y:e, 7odr:e, 7ods:e, 7odt:e, 8oir:Bv, 8oit:Bv, 8pk0:e, 7po4:e, 7qi4:e, 7qi5:e, 7qi6:e, 8qsj:e, 6zm5:e, 6zm6:e
16 3wzi:A 106 63 0.1974 0.1415 0.2381 4.6 3wzh:B, 3wzi:B, 6yud:A, 6yud:B, 6yud:E, 6yud:C, 6yud:D, 6yud:F, 6yud:I, 6yud:J
17 2zze:A 744 23 0.1316 0.0134 0.4348 8.6 2zze:B, 2zzf:A, 2zzg:A, 2zzg:B
18 7kcv:A 362 22 0.1184 0.0249 0.4091 9.9 6c39:A, 6dz8:A, 6dz8:B, 3hum:A, 3hum:B, 3hun:A, 3hun:B, 7kcw:A, 7kcx:A, 7kcy:A, 5tw4:A, 5tw4:B, 5tw8:A, 5tw8:B, 5tx9:A, 5tx9:B, 5txi:A, 5txi:B, 5ty2:A, 5ty2:B, 5ty7:A, 5ty7:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218