Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GSGFEGMFIRKGQWDCSVCCVQNESSSLKCVACDASKP

The query sequence (length=38) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7mnv:B 38 38 1.0000 1.0000 1.0000 1.27e-22
2 7mnt:B 38 32 0.6053 0.6053 0.7188 3.21e-11 7mnt:D, 7mnu:B
3 7mns:B 38 32 0.5263 0.5263 0.6250 9.85e-09
4 7mo5:B 36 36 0.4474 0.4722 0.4722 8.56e-08
5 7mnr:B 40 31 0.5000 0.4750 0.6129 3.36e-07
6 7mo2:B 38 38 0.5000 0.5000 0.5000 7.89e-07 3ch5:B, 7mo2:D
7 2ebq:A 47 27 0.3947 0.3191 0.5556 1.26e-06 2gqe:A, 2k0c:A
8 7mo3:B 38 38 0.4737 0.4737 0.4737 3.05e-06 7mo3:D, 7mo4:B, 7mo4:D
9 2ebr:A 47 25 0.3684 0.2979 0.5600 5.19e-06
10 2ebv:A 57 37 0.5000 0.3333 0.5135 5.46e-06
11 7mnp:B 39 38 0.4474 0.4359 0.4474 7.72e-06 7mnp:D, 7mnq:B
12 2d9g:A 53 27 0.3421 0.2453 0.4815 1.28e-04
13 8pp6:K 36 26 0.3421 0.3611 0.5000 6.40e-04
14 7mo1:B 34 24 0.2895 0.3235 0.4583 0.011
15 7pcv:A 116 24 0.2895 0.0948 0.4583 0.039 2lk0:A, 2lk1:A, 7pcv:B, 7pdv:E, 7pdv:A, 7pdv:C, 7pdv:G
16 3a9j:C 32 26 0.1842 0.2188 0.2692 0.34 9avt:C, 9avw:C, 7e62:C, 7e62:J, 2wwz:C, 2wx0:C, 2wx0:G, 2wx1:C
17 2d8v:A 67 17 0.2105 0.1194 0.4706 1.6
18 3icf:A 316 15 0.1842 0.0222 0.4667 3.8 3icf:B
19 2vqr:A 512 17 0.2105 0.0156 0.4706 4.0
20 6jk8:B 801 39 0.3158 0.0150 0.3077 4.6
21 6jk8:A 823 39 0.3158 0.0146 0.3077 5.9 1igr:A, 7v3p:B
22 8frl:G 338 34 0.2632 0.0296 0.2941 7.6 8frm:G, 8fro:G, 8ufg:G, 8ufh:G
23 2mxv:A 43 24 0.2632 0.2326 0.4167 8.0

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218