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BioLiP
>protein
GSFTPSGTTGTTKLTVTEKCQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRD
KLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWAK

The query sequence (length=140) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2jkj:F 140 140 1.0000 1.0000 1.0000 2.01e-100 2jkj:A, 2jkj:B, 2jkj:C, 2jkj:D, 2jkj:E, 2jkl:A, 2jkl:B, 2jkl:C, 2jkl:D, 2jkl:F, 2jkl:E, 2jkn:A, 2jkn:B, 2jkn:C, 2jkn:D, 2jkn:E, 2jkn:F, 1usq:A, 1usq:B, 1usq:C, 1usq:D, 1usq:E, 1usq:F, 2w5p:A, 2w5p:B, 2w5p:C
2 6g1h:A 342 49 0.1071 0.0439 0.3061 0.85 6g1m:A, 6g1m:B, 6g1m:C, 6g1m:D
3 7byv:A 428 55 0.1214 0.0397 0.3091 1.1 7bys:A, 7bys:B, 7byt:A, 7byx:A, 7byx:B, 7byx:C, 7byx:D
4 7xld:B 125 49 0.1000 0.1120 0.2857 1.6 7xli:B
5 7u0a:H 225 64 0.1357 0.0844 0.2969 1.9
6 8e3s:A 503 57 0.1143 0.0318 0.2807 3.2 8fzr:A
7 6vjt:H 223 35 0.0929 0.0583 0.3714 4.2
8 7o33:H 215 58 0.1214 0.0791 0.2931 4.6
9 4pex:B 551 32 0.0857 0.0218 0.3750 6.9 4pey:A, 4pez:A, 4pf0:A, 4pf0:B, 4tyv:B, 4tz1:A, 4tz3:A, 4tz5:A, 4tz5:B
10 8tzb:A 920 60 0.1357 0.0207 0.3167 9.5
11 8tyq:A 957 60 0.1357 0.0199 0.3167 9.5 8tze:A
12 6ncp:C 229 35 0.0786 0.0480 0.3143 9.5
13 2qs8:A 406 28 0.0786 0.0271 0.3929 9.6 2qs8:B
14 6vno:A 1084 60 0.1357 0.0175 0.3167 9.6 6vp6:A
15 8smc:C 1084 60 0.1357 0.0175 0.3167 9.6
16 8u7h:C 1111 60 0.1357 0.0171 0.3167 9.6
17 8fo9:A 1173 60 0.1357 0.0162 0.3167 9.6 8fo9:C
18 8tzh:A 1485 60 0.1357 0.0128 0.3167 9.7 3d6t:B
19 8tzf:A 1589 60 0.1357 0.0120 0.3167 9.8
20 8u8b:A 1712 60 0.1357 0.0111 0.3167 9.8 8u7l:B, 8u7l:A, 8u8a:B, 8u8a:C, 8u8b:B, 2zej:A
21 8fo9:F 2289 60 0.1357 0.0083 0.3167 9.9 9c61:A, 9c61:B, 8fo2:E, 8fo7:C, 8fo8:C, 8fo8:E, 8fo9:E, 7lht:A, 7lht:B, 7lhw:A, 7li3:A, 7li4:A, 6oje:A, 6oje:B, 6ojf:A, 6ojf:B, 7thy:A, 7thz:A, 6xaf:A, 6xaf:B, 2zej:B
22 7ut3:H 217 67 0.1143 0.0737 0.2388 10.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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