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BioLiP
>protein
GSFTPSGTTGTTKLTVTEKCQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRD
KLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWA

The query sequence (length=139) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2jkj:F 140 139 1.0000 0.9929 1.0000 9.19e-100 2jkj:A, 2jkj:B, 2jkj:C, 2jkj:D, 2jkj:E, 2jkl:A, 2jkl:B, 2jkl:C, 2jkl:D, 2jkl:F, 2jkl:E, 2jkn:A, 2jkn:B, 2jkn:C, 2jkn:D, 2jkn:E, 2jkn:F, 1usq:A, 1usq:B, 1usq:C, 1usq:D, 1usq:E, 1usq:F, 2w5p:A, 2w5p:B, 2w5p:C
2 6g1h:A 342 49 0.1079 0.0439 0.3061 0.77 6g1m:A, 6g1m:B, 6g1m:C, 6g1m:D
3 7byv:A 428 55 0.1223 0.0397 0.3091 1.1 7bys:A, 7bys:B, 7byt:A, 7byx:A, 7byx:B, 7byx:C, 7byx:D
4 7xld:B 125 49 0.1007 0.1120 0.2857 1.5 7xli:B
5 7u0a:H 225 64 0.1367 0.0844 0.2969 1.8
6 8e3s:A 503 57 0.1151 0.0318 0.2807 3.2 8fzr:A
7 6vjt:H 223 35 0.0935 0.0583 0.3714 4.1
8 7o33:H 215 58 0.1223 0.0791 0.2931 4.5
9 4pex:B 551 32 0.0863 0.0218 0.3750 7.0 4pey:A, 4pez:A, 4pf0:A, 4pf0:B, 4tyv:B, 4tz1:A, 4tz3:A, 4tz5:A, 4tz5:B
10 6ncp:C 229 35 0.0791 0.0480 0.3143 8.8
11 8tzb:A 920 60 0.1367 0.0207 0.3167 9.4
12 8tyq:A 957 60 0.1367 0.0199 0.3167 9.4 8tze:A
13 6vno:A 1084 60 0.1367 0.0175 0.3167 9.4 6vp6:A
14 8smc:C 1084 60 0.1367 0.0175 0.3167 9.4
15 8u7h:C 1111 60 0.1367 0.0171 0.3167 9.5
16 8fo9:A 1173 60 0.1367 0.0162 0.3167 9.5 8fo9:C
17 2qs8:A 406 28 0.0791 0.0271 0.3929 9.5 2qs8:B
18 8f9v:A 225 35 0.0863 0.0533 0.3429 9.5 8f9v:C, 8f9v:E, 8f9v:G, 8f9w:A, 8f9w:C, 8f9w:E, 8f9w:G
19 8fcz:C 114 35 0.0791 0.0965 0.3143 9.6 8fd0:C, 8fd0:D, 8fd1:C
20 8tzh:A 1485 60 0.1367 0.0128 0.3167 9.6 3d6t:B
21 8tzf:A 1589 60 0.1367 0.0120 0.3167 9.6
22 8u8b:A 1712 60 0.1367 0.0111 0.3167 9.6 8u7l:B, 8u7l:A, 8u8a:B, 8u8a:C, 8u8b:B, 2zej:A
23 8fo9:F 2289 60 0.1367 0.0083 0.3167 9.7 9c61:A, 9c61:B, 8fo2:E, 8fo7:C, 8fo8:C, 8fo8:E, 8fo9:E, 7lht:A, 7lht:B, 7lhw:A, 7li3:A, 7li4:A, 6oje:A, 6oje:B, 6ojf:A, 6ojf:B, 7thy:A, 7thz:A, 6xaf:A, 6xaf:B, 2zej:B
24 7ut3:H 217 67 0.1151 0.0737 0.2388 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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