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BioLiP
>protein
GSEVPQLTDLSFVDITDSSIGLRWTPLNSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLIN
GGESAPTTLTQQT

The query sequence (length=93) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2mnu:A 93 93 1.0000 1.0000 1.0000 2.40e-61
2 4lxo:A 184 86 0.3333 0.1685 0.3605 9.29e-07 4lxo:B
3 4lxo:A 184 83 0.3118 0.1576 0.3494 3.17e-05 4lxo:B
4 3ch8:A 190 79 0.3011 0.1474 0.3544 2.47e-05 2qbw:A
5 5a43:C 96 77 0.3011 0.2917 0.3636 7.01e-05
6 8f0m:B 91 88 0.3118 0.3187 0.3295 2.87e-04
7 7l0f:H 94 75 0.2903 0.2872 0.3600 8.60e-04 7l0f:F, 7l0f:B, 7l0f:M, 7l0g:C, 7l0g:D, 7l0g:F, 7l0g:H
8 6x38:A 93 78 0.2688 0.2688 0.3205 0.001
9 6ux8:B 86 86 0.3011 0.3256 0.3256 0.002
10 6d0j:C 90 74 0.3118 0.3222 0.3919 0.002 6d0k:C, 6d0n:C
11 3csb:A 464 76 0.3118 0.0625 0.3816 0.006
12 5v7p:D 95 74 0.2903 0.2842 0.3649 0.017
13 6x39:A 100 90 0.2796 0.2600 0.2889 0.018
14 8vxu:E 90 75 0.2796 0.2889 0.3467 0.025 7szt:F, 8tgy:C, 8tgy:D, 6wk9:C, 6wk9:G
15 4jmh:A 200 89 0.2688 0.1250 0.2809 0.026 4jmg:A
16 5mtm:B 92 95 0.3333 0.3370 0.3263 0.11
17 8af0:A 123 28 0.1075 0.0813 0.3571 2.5 8af0:B, 9bdl:ANG, 9bdn:ANG, 9bdp:ANG, 5epz:A, 5eqo:A, 1h52:A, 1h53:A, 1hby:A, 7npm:AAA
18 2wl9:A 300 50 0.1828 0.0567 0.3400 4.1 2wl3:A, 2wl3:B, 2wl3:C, 2wl3:D, 2wl9:B, 2wl9:C, 2wl9:D
19 6q7i:A 770 53 0.1828 0.0221 0.3208 5.2 6q7j:A, 6q7j:B
20 2qdg:A 366 30 0.1183 0.0301 0.3667 6.6 2qap:A, 2qap:B, 2qap:C, 2qap:D, 2qdg:B, 2qdg:C, 2qdg:D, 2qdh:A, 2qdh:B, 2qdh:C, 2qdh:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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