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BioLiP
>protein
GSEHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNRERQ

The query sequence (length=58) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5epl:B 58 58 1.0000 1.0000 1.0000 5.81e-38 5epl:A
2 5ejw:A 80 55 0.6897 0.5000 0.7273 1.39e-26 5epj:A, 2kvm:A, 2l12:A, 2l1b:A, 4mn3:A, 8sii:A, 8sii:B, 6v2r:A, 4x3k:A, 4x3k:B, 4x3s:B, 4x3s:A, 4x3t:A, 4x3t:B, 4x3t:C, 4x3t:D, 4x3t:E, 4x3t:F, 4x3u:A, 4x3u:B
3 5epk:A 54 54 0.6897 0.7407 0.7407 4.17e-26 3h91:A, 3h91:B
4 3gv6:A 56 56 0.6897 0.7143 0.7143 2.20e-25 3i90:A, 3i90:B
5 5eq0:A 55 55 0.6897 0.7273 0.7273 3.64e-25 3i91:A
6 1pfb:A 55 49 0.5000 0.5273 0.5918 1.88e-16 1pdq:A
7 3tzd:A 58 52 0.4138 0.4138 0.4615 2.75e-13 3dm1:A, 3dm1:C, 3dm1:G, 3dm1:E, 2l11:A
8 2rvn:A 83 50 0.3966 0.2771 0.4600 1.82e-12
9 7vyw:A 47 38 0.3793 0.4681 0.5789 2.02e-12
10 1guw:A 73 44 0.3793 0.3014 0.5000 1.85e-11 6d07:A, 6d07:B, 6d08:A, 6d08:B
11 8uxq:A 170 48 0.3966 0.1353 0.4792 2.30e-11 3fdt:A
12 8uxq:A 170 34 0.1724 0.0588 0.2941 7.5 3fdt:A
13 6asz:A 53 45 0.4483 0.4906 0.5778 6.67e-11 6at0:A, 1kna:A, 1kne:A, 6mha:A, 1q3l:A
14 7n27:A 57 55 0.3621 0.3684 0.3818 1.15e-08 7n27:D, 7n27:B, 7n27:C, 7n27:E, 7n27:F
15 6v41:AAA 61 51 0.3103 0.2951 0.3529 4.24e-08
16 3qo2:A 61 55 0.3448 0.3279 0.3636 3.95e-07 7m5u:A, 3qo2:D, 3qo2:B, 3qo2:C, 3r93:A, 3r93:D, 3r93:B, 3r93:C, 3svm:A, 6v2s:A, 6v2s:B
17 4u68:A 64 46 0.3448 0.3125 0.4348 6.17e-07 4quf:A, 4quf:B, 4quf:C, 4quf:D, 4quf:E, 4quf:F, 4u68:B, 4u68:C
18 6v2d:G 64 50 0.3276 0.2969 0.3800 9.87e-07 5jjz:A, 7slw:A, 7slw:B, 7slw:C, 7slw:D, 7slw:E, 7slw:F, 8sp6:A, 8sp6:B, 8sp6:C, 8sp6:D, 8sp6:E, 8sp6:F, 6v2d:I, 6v2d:K, 6v2d:A, 6v2d:C, 6v2d:E, 6v2h:A, 6v2h:C, 6v2h:E, 6v2h:G, 6v2h:I, 6v2h:K, 6v3n:A, 6v3n:B, 6v8w:A, 6v8w:B, 6v8w:C, 6v8w:D, 6v8w:E, 6v8w:F, 6v8w:G, 6v8w:H, 6v8w:I, 6v8w:J, 6v8w:K, 6v8w:L, 6v8w:M, 6v8w:N, 6v8w:O, 6v8w:P, 6v8w:Q, 6v8w:R, 6v8w:S, 6v8w:T, 6v8w:U, 6v8w:V, 6v8w:W, 6v8w:X, 6v8w:Y, 6v8w:Z
19 7vrf:A 61 46 0.3448 0.3279 0.4348 2.37e-06 7vrf:B
20 2rsn:A 75 42 0.3103 0.2400 0.4286 1.60e-05 3g7l:A
21 2b2w:A 177 25 0.2414 0.0791 0.5600 1.84e-05 5afw:A, 2b2t:A, 2b2u:A, 2b2v:A, 4nw2:A, 4nw2:C, 4o42:A
22 6s47:Bi 952 39 0.2586 0.0158 0.3846 1.25e-04
23 5e4w:C 105 57 0.3621 0.2000 0.3684 2.48e-04 5e4w:D, 5e4x:A
24 4fsx:A 680 29 0.1897 0.0162 0.3793 0.003 4fsx:B, 4ft2:B, 4ft2:A
25 7ubu:A 708 29 0.1897 0.0155 0.3793 0.004 4ft4:A, 4ft4:B
26 6g0l:M 855 40 0.2931 0.0199 0.4250 0.051 7nkx:W, 5o9g:W
27 6g0l:M 855 41 0.2759 0.0187 0.3902 0.36 7nkx:W, 5o9g:W
28 6ftx:W 878 40 0.2931 0.0194 0.4250 0.051 6g0l:W, 5j70:A, 5j70:B, 3mwy:W, 3ted:A
29 6ftx:W 878 37 0.2586 0.0171 0.4054 0.32 6g0l:W, 5j70:A, 5j70:B, 3mwy:W, 3ted:A
30 7tn2:W 895 40 0.2931 0.0190 0.4250 0.053 9gd2:W, 9gd3:W
31 7tn2:W 895 37 0.2586 0.0168 0.4054 0.32 9gd2:W, 9gd3:W
32 9gd1:W 849 40 0.2931 0.0200 0.4250 0.055
33 9gd1:W 849 41 0.2759 0.0188 0.3902 0.35
34 6ryr:W 708 25 0.1897 0.0155 0.4400 0.27 2l75:A, 1mm2:A, 6q3m:D, 6ryu:W, 6ryu:V
35 3bow:A 680 43 0.3103 0.0265 0.4186 0.33 3df0:A, 1mdw:A, 1mdw:B
36 1sa3:A 262 48 0.2586 0.0573 0.3125 0.69 1sa3:B, 1yfi:A, 1yfi:B
37 6q3m:C 219 25 0.1897 0.0502 0.4400 0.83 6q3m:A, 6q3m:B
38 3oa6:A 84 23 0.1379 0.0952 0.3478 0.89 3oa6:B
39 8yua:F 310 36 0.2414 0.0452 0.3889 1.8 4i50:F, 5lov:F, 8yu9:F
40 6guu:B 204 25 0.1724 0.0490 0.4000 4.7 6guu:A
41 6bdo:D 395 21 0.1552 0.0228 0.4286 5.3 6bdo:B, 6bdo:A, 6bdo:C, 5kmp:A, 5kmp:B, 5kmq:A, 5kmq:B, 5kmq:C, 5kmq:D, 5kmr:B, 5kmr:A, 5kmr:C, 5kmr:D, 5kms:A, 5kms:B, 5kms:C, 5kms:D, 4nwz:A, 4nwz:B, 4nwz:C, 4nwz:D, 5wed:B, 5wed:A, 5wed:C, 5wed:D
42 8s4t:A 136 28 0.1724 0.0735 0.3571 6.6 8s4t:B, 8s4t:C
43 6ywe:8 331 16 0.1552 0.0272 0.5625 7.5 6yws:8, 6ywv:8, 6ywx:8, 6ywy:8
44 2nqa:B 318 49 0.2586 0.0472 0.3061 7.7 2nqa:A
45 8b0r:A 496 26 0.1724 0.0202 0.3846 8.3
46 1gy8:C 370 29 0.2414 0.0378 0.4828 8.7 2cnb:A, 2cnb:B, 2cnb:C, 2cnb:D, 1gy8:A, 1gy8:B, 1gy8:D
47 7mq8:NH 1066 18 0.1207 0.0066 0.3889 9.3 7mqa:NH

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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