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BioLiP
>protein
GSEEIFTLQVRGRERYEILKKLNDSLELSDVV

The query sequence (length=32) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4d1l:F 38 30 0.9375 0.7895 1.0000 3.27e-15 4cz5:C, 4cz6:D
2 4mzr:A 234 27 0.5000 0.0684 0.5926 7.29e-06 4mzr:B, 4mzr:C, 4mzr:D, 3q01:A, 3q01:B, 3q05:A, 3q05:C, 3q05:B, 3q05:D, 3q06:A, 3q06:C, 3q06:D, 3q06:B, 3ts8:A, 3ts8:B, 3ts8:C, 3ts8:D
3 2wtt:L 46 29 0.5312 0.3696 0.5862 1.77e-05 2wqj:K, 2wqj:Z, 2wtt:N, 2wtt:O, 2wtt:P
4 7bwn:J 280 27 0.5000 0.0571 0.5926 1.80e-05 7bwn:O, 7bwn:C, 7bwn:M, 4gf6:B, 4w74:A, 4w74:B, 4w74:H, 4w74:C, 4w74:D, 4w74:E, 4w76:A, 4w76:B, 4w77:A, 4w77:B, 4w7a:A, 4w7a:B, 4w7c:B, 4w7d:A, 4w7f:A, 4w7r:A, 4w7r:B, 4w7r:C, 4w7r:D
5 2wqj:C 32 29 0.5312 0.5312 0.5862 1.99e-05
6 8a22:AO 377 27 0.3125 0.0265 0.3704 2.0 8apn:AO, 8apo:AO
7 1w5s:B 396 21 0.3125 0.0253 0.4762 3.8 1w5s:A, 1w5t:A, 1w5t:B, 1w5t:C
8 8jhz:A 2615 21 0.2500 0.0031 0.3810 5.2
9 3dy8:A 328 15 0.2188 0.0213 0.4667 5.6 6a3n:A, 6a3n:B, 8bpy:A, 8bpy:B, 3dy8:B, 3dyl:A, 3dyl:B, 3dyn:A, 3dyn:B, 3dyq:A, 3dys:A, 3dys:B, 4e90:A, 4e90:B, 7f0i:A, 7f0i:B, 4g2j:A, 4g2j:B, 4g2l:A, 4g2l:B, 4gh6:A, 4gh6:B, 2hd1:A, 2hd1:B, 3jsi:A, 3jsi:B, 3jsw:A, 3jsw:B, 3k3e:A, 3k3e:B, 3k3h:A, 3k3h:B, 6lzz:A, 6lzz:B, 3n3z:A, 3n3z:B, 4qge:A, 4qge:B, 3qi3:A, 3qi3:B, 3qi4:A, 3qi4:B, 4y86:A, 4y86:B, 4y87:A, 4y87:B, 4y8c:A, 4y8c:B, 2yy2:A, 2yy2:B
10 2nwb:A 379 16 0.3438 0.0290 0.6875 8.2
11 3fef:A 434 21 0.2812 0.0207 0.4286 8.5 3fef:B, 3fef:C, 3fef:D
12 5fqd:E 367 19 0.2188 0.0191 0.3684 9.8 4tz4:C, 8u17:A, 6uml:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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