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BioLiP
>protein
GSDSGTLNYEVYKYNTNDTSIANDYFNKPAKYIKKNGKLYVQITVNHSHWITGMSIEGHKENIISKNTAKDERTSEFEVS
KLNGKIDGKIDVYIDEKVNGKPFKYDHHYNITYKFNGPTDVAG

The query sequence (length=123) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2k78:A 126 123 0.9837 0.9603 0.9837 5.74e-86 2o6p:A, 2o6p:B
2 4h8q:A 119 119 0.2927 0.3025 0.3025 6.32e-13 4h8p:A
3 3sik:A 123 115 0.2927 0.2927 0.3130 1.78e-11 3sik:B
4 4myp:A 121 90 0.2195 0.2231 0.3000 7.48e-06 4myp:B
5 3qzp:B 125 119 0.2276 0.2240 0.2353 0.014 2itf:A, 2itf:B, 2itf:C, 2itf:D, 3qzl:A, 3qzm:A, 3qzm:B, 3qzn:A, 3qzn:B, 3qzn:C, 3qzo:A, 3qzo:C, 3qzo:B, 3qzo:D, 3qzp:A
6 7pcf:F 341 111 0.2683 0.0968 0.2973 0.090 7pch:E, 7pch:F, 3rtl:A, 3rtl:B, 3rtl:C, 3rtl:D, 3rur:A, 3rur:B, 3rur:C, 3rur:D, 5vmm:F, 5vmm:E
7 7w81:A 181 77 0.1545 0.1050 0.2468 4.0 3qug:A, 3qug:B, 3quh:A, 3quh:B, 3vtm:A, 3vtm:B, 7w81:B, 2z6f:A
8 8om2:V 286 45 0.0976 0.0420 0.2667 6.7 8d8j:V, 8d8k:V, 8d8l:V, 5mrc:VV, 5mre:VV, 5mrf:VV, 8om3:V, 8om4:V
9 7sgx:D 208 50 0.1138 0.0673 0.2800 6.8 7n4p:A, 7scm:A, 7scm:B, 7sgx:A, 7sgx:B, 7sgx:C
10 7pgn:B 438 17 0.0976 0.0274 0.7059 6.9 7pgm:B, 7pgn:A, 2wfx:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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