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BioLiP
>protein
GSDAIEKAVSRGQCLYKISSYTSYPMHDFYRCHTCNTTDRNAICVNCIKKCHQGHDVEFIRHDRFFCDCGAGTLSNPCTL
AGE

The query sequence (length=83) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7yrb:A 83 83 1.0000 1.0000 1.0000 3.43e-59 5vmd:A, 5vmd:C, 5vmd:B, 5vmd:D
2 8j9q:A 73 58 0.2651 0.3014 0.3793 6.43e-10 8j9q:B, 8j9q:C, 8j9r:A
3 8bja:B 1638 44 0.1807 0.0092 0.3409 1.42e-05
4 8bja:A 1563 44 0.1807 0.0096 0.3409 1.53e-05
5 8d4x:B 1669 44 0.1807 0.0090 0.3409 1.53e-05 8c06:A, 8c06:D
6 8e0q:A 1689 44 0.1807 0.0089 0.3409 1.53e-05 8d4x:A, 8e0q:B
7 8p82:A 1596 44 0.1807 0.0094 0.3409 1.72e-05 8p82:B
8 8ewi:A 1775 44 0.1807 0.0085 0.3409 1.76e-05 8ewi:B, 8ewi:C, 8ewi:D
9 7y70:A 77 49 0.2410 0.2597 0.4082 0.010 6lhn:A, 7xwd:A, 7xwe:A, 7xwe:B, 7xwf:A, 7xwg:A, 7xwg:B, 7y6w:A, 7y6x:A, 7y6x:B, 7y6x:D, 7y6x:E, 7y6x:F, 7y6x:G, 7y6x:H, 7y6x:C, 7y6y:A, 7y6y:B, 7y6y:C, 7y6y:D, 7y6z:A
10 7mex:A 1737 49 0.2169 0.0104 0.3673 0.011 6kgi:B, 7mey:A, 3nih:A, 3nii:A, 3nij:A, 3nik:B, 3nik:D, 3nik:A, 3nik:F, 3nil:D, 3nil:A, 3nil:B, 3nil:F, 3nim:B, 3nim:F, 3nim:A, 3nim:D, 3nin:A, 3nin:B, 3nis:A, 3nis:B, 3nis:D, 3nis:F, 3nit:A
11 7wul:A 70 45 0.2169 0.2571 0.4000 0.35 7wuk:A, 7wum:A, 7wun:A
12 4xoq:A 204 15 0.1205 0.0490 0.6667 1.4 4xoo:A, 4xoo:B, 4xoo:C, 4xoo:D, 4xoq:B, 4xoq:C, 4xoq:D
13 6k15:H 393 56 0.1928 0.0407 0.2857 1.6 6kw4:H, 6kw5:H, 6v8o:I, 6v92:I
14 3sgz:A 336 28 0.1205 0.0298 0.3571 9.7 3sgz:B, 3sgz:C, 1tb3:A, 1tb3:B, 1tb3:C, 1tb3:D, 1tb3:E, 1tb3:F, 1tb3:G, 1tb3:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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