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BioLiP
>protein
GSASSQVVMPPLVRGAQQKNGRGSDSSESCWNCGRKASETCSGCNAARYCGSFCQHRDWEKHHHVCGQSLQ

The query sequence (length=71) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 9de2:A 71 71 1.0000 1.0000 1.0000 2.47e-48
2 2od1:A 50 47 0.6056 0.8600 0.9149 6.81e-29 2odd:A
3 2dj8:A 60 42 0.5493 0.6500 0.9286 1.18e-25
4 4a24:A 47 42 0.3239 0.4894 0.5476 2.31e-13 2jw6:A
5 2d8q:A 70 42 0.2394 0.2429 0.4048 0.021 2dan:A
6 5ex0:A 429 33 0.1690 0.0280 0.3636 0.043 7bj1:A, 5ccl:A, 5ccm:A, 5ex3:A, 5hi7:A, 5hq8:A, 5hq8:B, 6ijl:A, 3mek:A, 7o2a:A, 7o2b:A, 7o2c:A, 6o9o:A, 8owo:A, 3oxf:A, 3oxf:B, 3oxg:A, 3oxl:A, 6p6g:A, 6p6k:A, 6p7z:A, 6paf:A, 3pdn:A, 7qlb:A, 7qnr:A, 7qnu:A, 3qwp:A, 3ru0:A, 3ru0:B, 5v37:A, 5xxd:A, 5xxg:A, 5xxj:A, 5yjo:A, 6yuh:A, 6zrb:A
7 2pzi:A 654 28 0.1549 0.0168 0.3929 0.073 2pzi:B, 7q52:AAA, 4y0x:A, 4y12:A
8 5v3h:A 438 47 0.2254 0.0365 0.3404 0.12 5arf:A, 5arg:A, 6cbx:A, 6cbx:B, 6cby:A, 6cby:B, 5kjk:A, 5kjl:A, 5kjm:A, 5kjn:A, 6mon:A, 6mon:B, 6n3g:A, 4o6f:A, 3qwv:A, 3qww:A, 3rib:A, 3rib:B, 3s7b:A, 3s7d:A, 3s7f:A, 3s7j:A, 3tg4:A, 3tg5:A, 5wcg:A, 4wuy:A, 4ynd:A
9 6yxx:ED 598 29 0.1831 0.0217 0.4483 1.0 7aoi:XC, 6yxy:ED
10 5l6q:A 108 34 0.1690 0.1111 0.3529 1.7 5l6q:B
11 7n0x:L 211 58 0.2535 0.0853 0.3103 2.7
12 7ox4:B 200 34 0.1690 0.0600 0.3529 5.3
13 6ekc:B1 73 29 0.1549 0.1507 0.3793 6.8 6ekb:A, 6ekc:B2, 6ekc:B3, 6ekc:B4, 6ekc:B5, 6ekc:B6, 6ekc:B7, 6ekc:B8, 6ekc:D1, 6ekc:D2, 6ekc:D3, 6ekc:D4, 6ekc:D5, 6ekc:D6, 6ekc:D7, 6ekc:D8, 6ekc:F1, 6ekc:F2, 6ekc:F3, 6ekc:F4, 6ekc:F5, 6ekc:F6, 6ekc:F7, 6ekc:F8, 6ekc:H1, 6ekc:H2, 6ekc:H3, 6ekc:H4, 6ekc:H5, 6ekc:H6, 6ekc:H7, 6ekc:H8, 6ekc:J1, 6ekc:J2, 6ekc:J3, 6ekc:J4, 6ekc:J5, 6ekc:J6, 6ekc:J7, 6ekc:J8, 6ekc:L1, 6ekc:L2, 6ekc:L3, 6ekc:L4, 6ekc:L5, 6ekc:L6, 6ekc:L7, 6ekc:L8, 6ekc:N1, 6ekc:N2, 6ekc:N3, 6ekc:N4, 6ekc:N5, 6ekc:N6, 6ekc:N7, 6ekc:N8, 6ekc:P1, 6ekc:P2, 6ekc:P3, 6ekc:P4, 6ekc:P5, 6ekc:P6, 6ekc:P7, 6ekc:P8, 6ekc:R1, 6ekc:R2, 6ekc:R3, 6ekc:R4, 6ekc:R5, 6ekc:R6, 6ekc:R7, 6ekc:R8, 6ekc:T1, 6ekc:T2, 6ekc:T3, 6ekc:T4, 6ekc:T5, 6ekc:T6, 6ekc:T7, 6ekc:T8
14 6rwg:A 157 51 0.2394 0.1083 0.3333 8.7 1a1t:A, 1aaf:A, 1bj6:A, 2buo:A, 1esk:A, 2exf:A, 1f6u:A, 5i1r:A, 2jzw:A, 2l4l:A, 2m3z:A, 1mfs:A, 1q3y:A, 1q3z:A, 7r7p:I, 7r7p:L

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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